RetrogeneDB ID: | retro_ptro_443 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 10:78359792..78360212(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C1D | ||
Ensembl ID: | ENSPTRG00000023558 | ||
Aliases: | None | ||
Description: | C1D nuclear receptor corepressor [Source:HGNC Symbol;Acc:29911] |
Percent Identity: | 92.2 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAGEEINEDYPVEIHEYLSAFENSIGAVDEMLKTMMSVSRNELLQKLDPLEQAKVDLVSAYTLNSMFWVY |
MA.EEIN.D.PVEIH.YLSAF.NSI.A.DEMLK.MMSVSRNELLQKLDPLEQAKVDLVSAYTLNSMFWVY | |
Retrocopy | MAAEEIN-DSPVEIHDYLSAFANSIDAADEMLKNMMSVSRNELLQKLDPLEQAKVDLVSAYTLNSMFWVY |
Parental | LATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVKNALWEPKPKNASKVANKGKSK |
LATQGVNPKEHPVKQELERIRVYMNRVKE.TDKKKAGKLDRGAASRFV.NALWEPKPKNASKVA.KGKSK | |
Retrocopy | LATQGVNPKEHPVKQELERIRVYMNRVKELTDKKKAGKLDRGAASRFVRNALWEPKPKNASKVAHKGKSK |
Parental | S |
S | |
Retrocopy | S |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 4 .95 RPM |
SRP007412_cerebellum | 0 .04 RPM | 3 .05 RPM |
SRP007412_heart | 0 .00 RPM | 3 .79 RPM |
SRP007412_kidney | 0 .03 RPM | 6 .90 RPM |
SRP007412_liver | 0 .03 RPM | 3 .21 RPM |
SRP007412_testis | 0 .00 RPM | 4 .00 RPM |
Species | RetrogeneDB ID |
---|---|
Pongo abelii | retro_pabe_202 |