Parental gene:

SSB, ENSPPYG00000012919

Aliases:None
Description:Sjogren syndrome antigen B (autoantigen La) [Source:HGNC Symbol;Acc:11316]
Organism:Orangutan (Pongo abelii)
Coordinates:2b:59862693..59881041(+)


>ENSPPYG00000012919
ATGGCTGAAAATGGTGATAATGAAAAGATGGCTGCCCTGGAGGCCAAAATCTGTCATCAAATTGAGTATTATTTTGGCGA
CTTCAATTTGCCACGGGACAAGTTTCTAAAGGAACAGATAAAACTGGATGAAGGCTGGGTACCTTTGGAGATAATGATAA
AATTCAACAGGTTGAACCGTCTAACAACAGACTTTAATGTAATCGTGGAAGCATTGAGCAAATCCAAGGCAGAACTCATG
GAAATCAGTGAAGATAAAACTAAAATCAGAAGGTCTCCAAGCAAACCCCTACCTGAAGTGACTGATGAGTATAAAAATGA
TGTAAAAAACAGATCTGTTTATATTAAAGGCTTCCCAACTGATGCAACTCTTGATGACATAAAAGAATGGTTAGAAGATA
AAGGTCAAGTACTAAATATTCAGATGAGAAGAACATTGCATAAAGCATTTAAGGGATCAATTTTCGTTGTGTTTGATAGC
ATTGAATCTGCTAAGAAGTTTGTAGAGACCCCTGGCCAGAAGTACAAAGAAACAGACTTGCTAATACTTTTCAAGGACGA
TTACTTTGCCAAAAAAAATGAAGAAAGAAAACAAAATAAAGTGGAAGCTAAATTAAGAGCTAAACAGGAGCAAGAAGCAA
AACAAAAGTTAGAAGAAGATGCTGAAATGAAATCTCTAGAAGAAAAGATTGGATGCTTGCTGAAATTTTCGGGTGATTTA
GATGATCAGACCTGTAGAGAAGATTTACACATACTTTTCTCAAATCATGGTGAAATAAAATGGATAGACTTCGTCAGAGG
AGCAAAAGAGGGGATAATTCTATTTAAAGAAAAAGCCAAGGAAGCATTGGGTAAAGCCAAAGATGCAAATAATGGTAACC
TACAATTAAGGAACAAAGAAGTGACTTGGGAAGTACTAGAAGGAGAGGTGGAAAAAGAAGCACTGAAAAAAATAATAGAA
GACCAACAAGAATCCCTAAACAAATGGAAGTCAAAAGGTCGTAGATTTAAAGGAAAAGGAAAGGGTAATAAAGCTGCCCA
GCCTGGGTCTGGTAAAGGAAAAGTACAGTTTCAGGGCAAGAAAACGAAATTTGCTAGTGACGATGAACATGATGAAAATG
GTGCAACTGGACCTGTGAAAAGAGCAAGAGAAGAAACAGACAAAGAAGAACCTGCATCCAAACAACAGAAAACAGAAAAT
GGTGCTGGAGACCAGTAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 35 .33 RPM
SRP007412_cerebellum 25 .78 RPM
SRP007412_heart 15 .77 RPM
SRP007412_kidney 27 .51 RPM
SRP007412_liver 17 .99 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000007763 ortholog_one2one 5 retrogenes
Dasypus novemcinctus ENSDNOG00000013450 ortholog_one2one 1 retrogene
Echinops telfairi ENSETEG00000004614 ortholog_one2one 1 retrogene
Homo sapiens ENSG00000138385 ortholog_one2one 1 retrogene
Gorilla gorilla ENSGGOG00000023471 ortholog_one2one 4 retrogenes
Loxodonta africana ENSLAFG00000000867 ortholog_one2many 3 retrogenes
Macropus eugenii ENSMEUG00000001650 ortholog_one2one 1 retrogene
Myotis lucifugus ENSMLUG00000016316 ortholog_one2one 1 retrogene
Macaca mulatta ENSMMUG00000023051 ortholog_one2one 2 retrogenes
Monodelphis domestica ENSMODG00000008227 ortholog_one2many 1 retrogene
Nomascus leucogenys ENSNLEG00000004958 ortholog_one2one 3 retrogenes
Otolemur garnettii ENSOGAG00000029768 ortholog_one2one 1 retrogene
Pan troglodytes ENSPTRG00000012620 ortholog_one2one 1 retrogene
Rattus norvegicus ENSRNOG00000007998 ortholog_one2many 1 retrogene
Tupaia belangeri ENSTBEG00000009056 ortholog_one2one 4 retrogenes
Tursiops truncatus ENSTTRG00000002152 ortholog_one2one 2 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_424 84.26 100.00
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2. retro_pabe_3408 74.75 72.59
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3. retro_pabe_3641 93.40 77.78
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Download FASTA sequences of all ENSPPYG00000012919 retrocopies