RetrogeneDB ID: | retro_mmul_1153 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 15:63906417..63907080(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.18006 | ||
Ensembl ID: | ENSMMUG00000023051 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 78.85 % |
Parental protein coverage: | 61.43 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | SVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPDQKYKET-DL |
S.YIKGFPTDAT.DDIKE.LED.GQVL.I.MRRTLHKAFKGS.F.VF...ESAKKFVETP.QKYK.T..L | |
Retrocopy | SIYIKGFPTDATVDDIKE*LEDRGQVLTILMRRTLHKAFKGSMFAVFGNNESAKKFVETPSQKYKNT<SL |
Parental | LILFKDDYFAKKNEERKQNKVEAKLRAKQEQEAKQKLEEDAEMKSLE-EKIGCLLKFSGDLDDQTCREDL |
LILFK..YFA.K.EER.Q...E.KLRAKQEQE.K.KL.EDAEM.SLE.EKIGCLLKF.GDLDDQTCRE.. | |
Retrocopy | LILFKKYYFAEKSEERQQSNMEDKLRAKQEQEGK*KL-EDAEMESLE>EKIGCLLKFLGDLDDQTCREGS |
Parental | HILFSNHGEIKWI-DFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLEGEVEKEDTEKN |
HILFSNHGE.KW..DFVRGAKEGII.FKEK..EALGK.KDANNGNLQLRNKEVTWEVLEG.VEKE...KN | |
Retrocopy | HILFSNHGELKWM<DFVRGAKEGIIRFKEKVEEALGKVKDANNGNLQLRNKEVTWEVLEGQVEKE-ALKN |
Parental | N-RRPTRIPKQMEVKRT |
...RPT.IPKQMEVKR. | |
Retrocopy | H>KRPTLIPKQMEVKRS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 51 .88 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 22 .45 RPM |
SRP007412_cerebellum | 0 .06 RPM | 49 .79 RPM |
SRP007412_heart | 0 .00 RPM | 32 .68 RPM |
SRP007412_kidney | 0 .00 RPM | 37 .09 RPM |
SRP007412_liver | 0 .00 RPM | 9 .46 RPM |
SRP007412_testis | 0 .00 RPM | 33 .66 RPM |
Species | RetrogeneDB ID |
---|---|
Pongo abelii | retro_pabe_3408 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000007763 | 5 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000013450 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000004614 | 1 retrocopy | |
Homo sapiens | ENSG00000138385 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000023471 | 4 retrocopies | |
Loxodonta africana | ENSLAFG00000000867 | 3 retrocopies | |
Macropus eugenii | ENSMEUG00000001650 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000016316 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000023051 | 2 retrocopies |
retro_mmul_1153 , retro_mmul_529,
|
Monodelphis domestica | ENSMODG00000008227 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000004958 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000029768 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000012919 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000012620 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000007998 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000009056 | 4 retrocopies | |
Tursiops truncatus | ENSTTRG00000002152 | 2 retrocopies |