RetrogeneDB ID:

retro_meug_1908

Retrocopy
location
Organism:Wallaby (Macropus eugenii)
Coordinates:Scaffold71321:3526..4033(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:SSB
Ensembl ID:ENSMEUG00000001650
Aliases:None
Description:Sjogren syndrome antigen B (autoantigen La) [Source:HGNC Symbol;Acc:11316]


Retrocopy-Parental alignment summary:






>retro_meug_1908
TACTATTTTGGTGACTTTAACCTTCCATGAGACAAATTTTTAAAGGAACAGATCAAAATAGATGATGGCTGGGTACCTTT
GGAGATAATGATCAAATTCAACAGATTAAGCAAACTAACGAAAGACTTTGATGTGATAAGAAGTGCTCTAAAGAAATCCA
AGGCAGAACTCATGGAAGTTAGTGAGGATAAAACTAAAATCAGAAGATCTCCAAATAAACCCCTCCCTGAAGTAACAGAT
GAGTATAAAAATGAAGTAAAAAACAGATCTATCTATGTTAAAGGTTTTCCAACAGATGCAACCCTTGATGACATAAAAGA
ATGGTTAGAAGGTAAAGGTCAAGTACAAAATATTCAGATGAGGAGAACATTACATAAAGCATTTAAGGGATCAATATTTG
CTGTGTCTGATAGTGTTGAATCTGCCAAGAAGTTTATAGAAACCCCGGGACAAAAATACAAAGATACAGAGCTGCTGATA
CTTTTTAAGGAAGATTACTTTGCAAAA

ORF - retro_meug_1908 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 98.82 %
Parental protein coverage: 68.15 %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalYYFGDFNLPRDKFLKEQIKIDDGWVPLEIMIKFNRLSKLTKDFDVIRSALKKSKAELMEVSEDKTKIRRS
YYFGDFNLP.DKFLKEQIKIDDGWVPLEIMIKFNRLSKLTKDFDVIRSALKKSKAELMEVSEDKTKIRRS
RetrocopyYYFGDFNLP*DKFLKEQIKIDDGWVPLEIMIKFNRLSKLTKDFDVIRSALKKSKAELMEVSEDKTKIRRS
ParentalPNKPLPEVTDEYKNEVKNRSIYVKGFPTDATLDDIKEWLEGKGQVQNIQMRRTLHKAFKGSIFAVFDSVE
PNKPLPEVTDEYKNEVKNRSIYVKGFPTDATLDDIKEWLEGKGQVQNIQMRRTLHKAFKGSIFAV.DSVE
RetrocopyPNKPLPEVTDEYKNEVKNRSIYVKGFPTDATLDDIKEWLEGKGQVQNIQMRRTLHKAFKGSIFAVSDSVE
ParentalSAKKFIETPGQKYKDTELLILFKEDYFAK
SAKKFIETPGQKYKDTELLILFKEDYFAK
RetrocopySAKKFIETPGQKYKDTELLILFKEDYFAK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_1908 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_1908 was not experimentally validated.

Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 18 parental genes, and 38 retrocopies.

Species Parental gene accession Retrocopies number
Choloepus hoffmanni ENSCHOG000000077635 retrocopies
Dasypus novemcinctus ENSDNOG000000134501 retrocopy
Echinops telfairi ENSETEG000000046141 retrocopy
Homo sapiens ENSG000001383851 retrocopy
Gorilla gorilla ENSGGOG000000115073 retrocopies
Gorilla gorilla ENSGGOG000000234714 retrocopies
Loxodonta africana ENSLAFG000000008673 retrocopies
Macropus eugenii ENSMEUG00000001650 1 retrocopy
retro_meug_1908 ,
Myotis lucifugus ENSMLUG000000163161 retrocopy
Macaca mulatta ENSMMUG000000230512 retrocopies
Monodelphis domestica ENSMODG000000082271 retrocopy
Nomascus leucogenys ENSNLEG000000049583 retrocopies
Otolemur garnettii ENSOGAG000000297681 retrocopy
Pongo abelii ENSPPYG000000129193 retrocopies
Pan troglodytes ENSPTRG000000126201 retrocopy
Rattus norvegicus ENSRNOG000000079981 retrocopy
Tupaia belangeri ENSTBEG000000090564 retrocopies
Tursiops truncatus ENSTTRG000000021522 retrocopies



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