RetrogeneDB ID: | retro_tbel_4012 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_5407:74852..75444(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SSB | ||
Ensembl ID: | ENSTBEG00000009056 | ||
Aliases: | None | ||
Description: | Sjogren syndrome antigen B (autoantigen La) [Source:HGNC Symbol;Acc:11316] |
Percent Identity: | 76.5 % |
Parental protein coverage: | 50.9 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | AKKNAERRQHKVEAKLRAKRQKSLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFIRGAKEGI |
AK..A.R.Q............KSLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFIRGAKEGI | |
Retrocopy | AKLRAKREQEEKQKLAEDAEMKSLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFIRGAKEGI |
Parental | ILFKEKAKKTLEKAKDANNGNLQLRNKAVTWEVLEGEVEKAALKKIIEDQQESLNKWKSKGRKFKGKGNK |
ILF...............NGNLQLRNKAVTWEVLEGEVEKAALKKIIEDQQESLNKWKS.G.KFKGKGNK | |
Retrocopy | ILFXXXXXXXXXXXXXXXNGNLQLRNKAVTWEVLEGEVEKAALKKIIEDQQESLNKWKSRGHKFKGKGNK |
Parental | AAQSVS-AKAKVQF-QGKKTKFDSDDDFDEYEPSTRPVKRAREETATKEPASKQQKTNGG |
A...V...K.K..F.QGKKTKFD.DDDFDEYEPSTRPVKRAREETATKEPASKQQK...G | |
Retrocopy | ASTCVC<LKQKYSF<QGKKTKFDGDDDFDEYEPSTRPVKRAREETATKEPASKQQKA*NG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000007763 | 5 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000013450 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000004614 | 1 retrocopy | |
Homo sapiens | ENSG00000138385 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000011507 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000023471 | 4 retrocopies | |
Loxodonta africana | ENSLAFG00000000867 | 3 retrocopies | |
Macropus eugenii | ENSMEUG00000001650 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000016316 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000023051 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000008227 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000004958 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000029768 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000012919 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000012620 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000007998 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000009056 | 4 retrocopies | |
Tursiops truncatus | ENSTTRG00000002152 | 2 retrocopies |