RetrogeneDB ID: | retro_dnov_2038 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_43755:10697..11644(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SSB | ||
Ensembl ID: | ENSDNOG00000013450 | ||
Aliases: | None | ||
Description: | Sjogren syndrome antigen B (autoantigen La) [Source:HGNC Symbol;Acc:11316] |
Percent Identity: | 75.39 % |
Parental protein coverage: | 78.02 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 5 |
Parental | MAENGDNEKMAALEAKICHQIEYYF-GDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIV |
MAENGDNEKM..LE.KICHQIEYYF.GDFNLP.D..LKEQIKLDEG.V.LE.MI.F.RL..L.TDFNVIV | |
Retrocopy | MAENGDNEKMVVLEVKICHQIEYYF>GDFNLPQDYILKEQIKLDEG*VSLEKMIQFSRLIHLATDFNVIV |
Parental | EALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKN-RSVYIKGFPTDATLDDIKEWLEDKGQV- |
..LSKSK.ELMEISE.KT.IRRSP..PLPEVTDE..NDVKN.R...IKGF.T.ATLDDI.EWLEDK.QV. | |
Retrocopy | DTLSKSKEELMEISEGKT*IRRSPTMPLPEVTDEF*NDVKN>RFICIKGFSTGATLDDIEEWLEDKDQV< |
Parental | LNIQMRRTLHKAFKGSIFAVFDSVDSAKKFVETSGQKYKDTDLLILFKEDYFAKKNEE-RKQNKVEAKLR |
.N...RRTLHK.FKG..FAVFDS..S..KFVET.GQKYKDT.LLIL.KE.YFAK.NEE.R.QNKVEAKLR | |
Retrocopy | INTHLRRTLHKVFKGQVFAVFDSTASVNKFVETPGQKYKDTALLILSKENYFAKQNEE<R*QNKVEAKLR |
Parental | AKQEQEE-KQKLAEDAEMRSLEEKVGCLLKFSGDLDDQTCREDLHILFSSHGEIKWIDFVRGAKEGIILF |
AKQ......QKL.E.AEM.SLEEK.GC.LK.SG..DDQT.RED.HILF.SH..I.WIDFVRGAKE.IILF | |
Retrocopy | AKQKKKY<QQKLEEYAEMKSLEEKIGCFLKISGNIDDQTSREDIHILFTSHSKITWIDFVRGAKERIILF |
Parental | KEKAKEALDKAKDANNGNLQLRNKDVTWEVLEGEVEKEALK |
KEKAKEAL.KAK.ANN.NLQLRNKDVT.EVLEGEVEK...K | |
Retrocopy | KEKAKEALNKAKYANNVNLQLRNKDVTLEVLEGEVEKSTGK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 93 .93 RPM |
SRP012922_cerebellum | 0 .00 RPM | 141 .87 RPM |
SRP012922_heart | 0 .00 RPM | 67 .99 RPM |
SRP012922_kidney | 0 .00 RPM | 107 .33 RPM |
SRP012922_liver | 0 .00 RPM | 52 .48 RPM |
SRP012922_lung | 0 .00 RPM | 119 .74 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 53 .48 RPM |
SRP012922_spleen | 0 .00 RPM | 138 .73 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000007763 | 5 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000013450 | 1 retrocopy |
retro_dnov_2038 ,
|
Echinops telfairi | ENSETEG00000004614 | 1 retrocopy | |
Homo sapiens | ENSG00000138385 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000011507 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000023471 | 4 retrocopies | |
Loxodonta africana | ENSLAFG00000000867 | 3 retrocopies | |
Macropus eugenii | ENSMEUG00000001650 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000016316 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000023051 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000008227 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000004958 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000029768 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000012919 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000012620 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000007998 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000009056 | 4 retrocopies | |
Tursiops truncatus | ENSTTRG00000002152 | 2 retrocopies |