Parental gene: | PCNP, ENSPPYG00000013591 |
| Aliases: | None |
| Description: | PEST proteolytic signal-containing nuclear protein [Source:UniProtKB/Swiss-Prot;Acc:Q5RCI9] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 3:31538538..31559343(-) |
>ENSPPYG00000013591
ATGGTTGTTGGGCGGGGTCGTGACGTCCTTGGCGTGGCTGCAGGGGAGGCCGCGGCGGGGAAAATGGCGGACGGGAAGGC
GGGAGAGGAGAAGCCTGAAAAGTCGCAGCGAGCTGGAGCCGCCGGAGGACCTGAAGAAGAAGCAGAAAAACCTGTGAAAA
CTAAGACTGTTTCTTCCAGTAATGGAGGGGAAAGTTCCAGTCGCAGCGCTGAGAAGCGATCAGCTGAAGAAGAAGCTGTC
GACCTCCCAACAAAGCCTACAAAGATCTCCAAGTTTGGATTTGCCATAGGTAGTCAGACGACAAAGAAAGCATCAGCCAT
ATCCATCAAACTTGGATCAAGTAAGCCTAAAGAAACTGTTCCAACTCTTGCTCCAAAAACTCTTTCAGTAGCAGCAGCTT
TTAATGAAGATGAAGATAGTGAACCAGAGGAAATGCCTCCAGAAGCAAAGATGAGGATGAAGAATATTGGAAGGGATACA
CCAACATCAGCTGGACCAAACTCCTTCAATAAAGGAAAGCATGGGTTTTCTGATAACCAGAAGCTGTGGGAGCGAAATAT
AAAATCTCATCTTGGAAATGTCCATGACCAAGACAATTAA
ATGGTTGTTGGGCGGGGTCGTGACGTCCTTGGCGTGGCTGCAGGGGAGGCCGCGGCGGGGAAAATGGCGGACGGGAAGGC
GGGAGAGGAGAAGCCTGAAAAGTCGCAGCGAGCTGGAGCCGCCGGAGGACCTGAAGAAGAAGCAGAAAAACCTGTGAAAA
CTAAGACTGTTTCTTCCAGTAATGGAGGGGAAAGTTCCAGTCGCAGCGCTGAGAAGCGATCAGCTGAAGAAGAAGCTGTC
GACCTCCCAACAAAGCCTACAAAGATCTCCAAGTTTGGATTTGCCATAGGTAGTCAGACGACAAAGAAAGCATCAGCCAT
ATCCATCAAACTTGGATCAAGTAAGCCTAAAGAAACTGTTCCAACTCTTGCTCCAAAAACTCTTTCAGTAGCAGCAGCTT
TTAATGAAGATGAAGATAGTGAACCAGAGGAAATGCCTCCAGAAGCAAAGATGAGGATGAAGAATATTGGAAGGGATACA
CCAACATCAGCTGGACCAAACTCCTTCAATAAAGGAAAGCATGGGTTTTCTGATAACCAGAAGCTGTGGGAGCGAAATAT
AAAATCTCATCTTGGAAATGTCCATGACCAAGACAATTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 53 .69 RPM |
| SRP007412_cerebellum | 67 .61 RPM |
| SRP007412_heart | 34 .05 RPM |
| SRP007412_kidney | 40 .44 RPM |
| SRP007412_liver | 25 .40 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000007972 | ortholog_one2one | 11 retrogenes | |
| Callithrix jacchus | ENSCJAG00000000508 | possible_ortholog | 6 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000008873 | ortholog_one2one | 5 retrogenes | |
| Homo sapiens | ENSG00000081154 | ortholog_one2one | 3 retrogenes | |
| Gorilla gorilla | ENSGGOG00000025423 | ortholog_one2one | 4 retrogenes | |
| Loxodonta africana | ENSLAFG00000005518 | ortholog_one2one | 2 retrogenes | |
| Microcebus murinus | ENSMICG00000008072 | ortholog_one2one | 10 retrogenes | |
| Macaca mulatta | ENSMMUG00000017782 | ortholog_one2one | 3 retrogenes | |
| Mustela putorius furo | ENSMPUG00000011696 | possible_ortholog | 1 retrogene | |
| Mus musculus | ENSMUSG00000071533 | ortholog_one2one | 4 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000003224 | ortholog_one2one | 2 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000011110 | ortholog_one2one | 7 retrogenes | |
| Procavia capensis | ENSPCAG00000007007 | ortholog_one2one | 3 retrogenes | |
| Pan troglodytes | ENSPTRG00000015172 | ortholog_one2one | 3 retrogenes | |
| Rattus norvegicus | ENSRNOG00000028411 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_935 | 82.44 | 64.32 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_961 | 83.33 | 86.43 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_pabe_1051 | 84.62 | 70.35 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_pabe_1598 | 91.80 | 61.31 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_pabe_3778 | 73.77 | 91.46 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000013591 retrocopies