RetrogeneDB ID: | retro_mmul_2598 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | X:74572210..74572719(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000021208 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.3271 | ||
Ensembl ID: | ENSMMUG00000017782 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.26 % |
Parental protein coverage: | 96.07 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MADGKAGEEKPEKSQRAGAAGGPEEEAEKPVKTKTVSSSNGGESSSRSAEKRSAEEEAADLPTKPTKISK |
MAD.K.GEEK.EK.Q.AGA.G.PEEE..KPVKTK.V.SSNGG.SS..S.E..SAE.EAA.LPTKPTKI.K | |
Retrocopy | MADRKVGEEKAEKLQ*AGAIGRPEEEVKKPVKTKAVYSSNGGKSSGHSTENPSAEKEAAVLPTKPTKI-K |
Parental | FGFAIGSQTTKKASAISIKLGSSKPKETVPTLAPKTLSVAAAFNEDEDSEPEEMPPEAKMRMKNIGRDTP |
F..A.GSQ.T.KASAISIKLG.SKPKE.VPTLA.K.L.VAA.FNE.E.S.PE.MPPEAKMR.K.IGR.T. | |
Retrocopy | FRSATGSQMTNKASAISIKLGLSKPKEPVPTLASKILLVAAGFNENEGSQPEAMPPEAKMRIKYIGRNTL |
Parental | TSAGPNSFNK-GKHGFSDNQKLWERNIKSHLG |
TSAGPNSFNK..KH.FS.NQKLWE.N.K.HLG | |
Retrocopy | TSAGPNSFNK<KKHVFSVNQKLWEQNRKPHLG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 62 .97 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 50 .45 RPM |
SRP007412_cerebellum | 0 .00 RPM | 81 .30 RPM |
SRP007412_heart | 0 .06 RPM | 31 .27 RPM |
SRP007412_kidney | 0 .00 RPM | 31 .45 RPM |
SRP007412_liver | 0 .00 RPM | 9 .94 RPM |
SRP007412_testis | 0 .00 RPM | 21 .67 RPM |
Species | RetrogeneDB ID |
---|---|
Pongo abelii | retro_pabe_3778 |