Parental gene: | ENSCJAG00000000508 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 15:95138981..95160729(-) |
>ENSCJAG00000000508
ATGGCGGACGGGAAGGCGGGAGAGGAGAAGCCCGAAAAGTCGCAGCGAGCTGGAGCCGCCGGAGGACCTGAAGAAGAAGC
AGAAAAACCTGTGAAAACTAAGACTGTTTCTTCCAGTAATGGAGGGGAAAGTTCCAGTCGCAGCGCTGAGAAGCGATCAG
CTGAAGAAGAAGCTGCAGACCTCCCAACAAAACCTACAAAGATCTCCAAGTTTGGATTTGCCATAGGTAGTCAGACGACA
AAGAAAGCATCAGCCATATCCATCAAACTTGGATCAAGTAAGCCTAAAGAAACTGTTCCAACTCTTGCTCCTAAAACACT
TTCAGTAGCAGCAGCTTTTAATGAAGATGAAGATAGTGAACCAGAAGAAATGCCTCCAGAAGCAAAGATGAGGATGAAGA
ATATTGGAAGGGATACACCAACATCAGCTGGACCAAACTCTTTCAATAAAGGAAAGCATGGGTTTTCTGATAACCAGAAG
CTATGGGAGCGAAATATAAAATCTCATCTTGGAAATGTCCATGACCAAGACAATTAA
ATGGCGGACGGGAAGGCGGGAGAGGAGAAGCCCGAAAAGTCGCAGCGAGCTGGAGCCGCCGGAGGACCTGAAGAAGAAGC
AGAAAAACCTGTGAAAACTAAGACTGTTTCTTCCAGTAATGGAGGGGAAAGTTCCAGTCGCAGCGCTGAGAAGCGATCAG
CTGAAGAAGAAGCTGCAGACCTCCCAACAAAACCTACAAAGATCTCCAAGTTTGGATTTGCCATAGGTAGTCAGACGACA
AAGAAAGCATCAGCCATATCCATCAAACTTGGATCAAGTAAGCCTAAAGAAACTGTTCCAACTCTTGCTCCTAAAACACT
TTCAGTAGCAGCAGCTTTTAATGAAGATGAAGATAGTGAACCAGAAGAAATGCCTCCAGAAGCAAAGATGAGGATGAAGA
ATATTGGAAGGGATACACCAACATCAGCTGGACCAAACTCTTTCAATAAAGGAAAGCATGGGTTTTCTGATAACCAGAAG
CTATGGGAGCGAAATATAAAATCTCATCTTGGAAATGTCCATGACCAAGACAATTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 17 .04 RPM |
| SRP051959_skeletal_muscle | 14 .26 RPM |
| SRP051959_lymph_node | 16 .99 RPM |
| SRP051959_lung | 20 .50 RPM |
| SRP051959_liver | 14 .21 RPM |
| SRP051959_kidney | 15 .46 RPM |
| SRP051959_heart | 15 .54 RPM |
| SRP051959_colon | 9 .76 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000003777 | possible_ortholog | 2 retrogenes | |
| Canis familiaris | ENSCAFG00000009593 | possible_ortholog | 3 retrogenes | |
| Choloepus hoffmanni | ENSCHOG00000007972 | ortholog_one2many | 11 retrogenes | |
| Cavia porcellus | ENSCPOG00000010610 | ortholog_one2many | 2 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000008873 | ortholog_one2many | 5 retrogenes | |
| Felis catus | ENSFCAG00000029026 | possible_ortholog | 2 retrogenes | |
| Homo sapiens | ENSG00000081154 | possible_ortholog | 3 retrogenes | |
| Gorilla gorilla | ENSGGOG00000025423 | possible_ortholog | 4 retrogenes | |
| Loxodonta africana | ENSLAFG00000005518 | ortholog_one2many | 2 retrogenes | |
| Microcebus murinus | ENSMICG00000008072 | possible_ortholog | 10 retrogenes | |
| Myotis lucifugus | ENSMLUG00000005878 | possible_ortholog | 5 retrogenes | |
| Macaca mulatta | ENSMMUG00000017782 | possible_ortholog | 3 retrogenes | |
| Mustela putorius furo | ENSMPUG00000011696 | possible_ortholog | 1 retrogene | |
| Mus musculus | ENSMUSG00000071533 | possible_ortholog | 4 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000003224 | possible_ortholog | 2 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000011110 | possible_ortholog | 7 retrogenes | |
| Otolemur garnettii | ENSOGAG00000001821 | ortholog_one2many | 4 retrogenes | |
| Procavia capensis | ENSPCAG00000007007 | ortholog_one2many | 3 retrogenes | |
| Pongo abelii | ENSPPYG00000013591 | possible_ortholog | 5 retrogenes | |
| Pan troglodytes | ENSPTRG00000015172 | possible_ortholog | 3 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000009886 | possible_ortholog | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000028411 | possible_ortholog | 1 retrogene | |
| Sorex araneus | ENSSARG00000001433 | possible_ortholog | 2 retrogenes | |
| Sus scrofa | ENSSSCG00000011955 | possible_ortholog | 5 retrogenes | |
| Tursiops truncatus | ENSTTRG00000015008 | possible_ortholog | 1 retrogene | |
| Vicugna pacos | ENSVPAG00000012239 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_101 | 76.40 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_401 | 82.98 | 78.09 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_1569 | 90.00 | 78.65 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_1722 | 84.31 | 84.83 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cjac_3205 | 86.67 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_cjac_3332 | 78.89 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000000508 retrocopies