Parental gene:

HIGD1A, ENSPPYG00000013974

Aliases:None
Description:HIG1 domain family member 1A [Source:UniProtKB/Swiss-Prot;Acc:Q5NVQ1]
Organism:Orangutan (Pongo abelii)
Coordinates:3:103855396..103873044(+)


>ENSPPYG00000013974
ATGTCAACAGACACAGGTGTTTCCCTTCCTTCATATGAGGAAGATCAGGGATCCAAACTTATTCGAAAAGCTAAAGAGGC
ACCATTCGTACCCGTTGGAATAGCAGGTTTTGCAGCAATTGTTGCATATGGATTATACAAACTGAAGAGCAGGGGAAATA
CTAAAATGTCCATTCATCTGATCCACATGCGTGTGGCAGCCCAAGGCTTTGTTGTAGGAGCAATGACTGTTGGTATGGGC
TATTCCATGTATCGGGAATTCTGGGCAAAACCTAAGCCTTAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 49 .82 RPM
SRP007412_cerebellum 51 .44 RPM
SRP007412_heart 154 .94 RPM
SRP007412_kidney 74 .75 RPM
SRP007412_liver 47 .86 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000012431 ortholog_one2one 1 retrogene
retro_amel_679,
Choloepus hoffmanni ENSCHOG00000009079 ortholog_one2one 10 retrogenes
retro_chof_1067, retro_chof_1609, retro_chof_171, retro_chof_180, retro_chof_1978, retro_chof_2028, retro_chof_2253, retro_chof_495, retro_chof_546, retro_chof_81,
Callithrix jacchus ENSCJAG00000032668 ortholog_one2many 9 retrogenes
retro_cjac_1056, retro_cjac_1703, retro_cjac_3001, retro_cjac_3044, retro_cjac_3211, retro_cjac_4111, retro_cjac_514, retro_cjac_79, retro_cjac_920,
Cavia porcellus ENSCPOG00000000703 ortholog_one2one 11 retrogenes
retro_cpor_1263, retro_cpor_1517, retro_cpor_314, retro_cpor_347, retro_cpor_420, retro_cpor_800, retro_cpor_973, retro_cpor_974, retro_cpor_975, retro_cpor_976, retro_cpor_977,
Equus caballus ENSECAG00000010978 ortholog_one2one 1 retrogene
retro_ecab_755,
Echinops telfairi ENSETEG00000007493 ortholog_one2one 4 retrogenes
retro_etel_1278, retro_etel_1741, retro_etel_1957, retro_etel_767,
Felis catus ENSFCAG00000000537 ortholog_one2one 2 retrogenes
retro_fcat_1479, retro_fcat_414,
Homo sapiens ENSG00000181061 ortholog_one2one 13 retrogenes
retro_hsap_1003, retro_hsap_1221, retro_hsap_1313, retro_hsap_205, retro_hsap_2391, retro_hsap_2411, retro_hsap_2969, retro_hsap_3269, retro_hsap_391, retro_hsap_3975, retro_hsap_4079, retro_hsap_884, retro_hsap_996,
Gorilla gorilla ENSGGOG00000016759 ortholog_one2many 3 retrogenes
retro_ggor_1025, retro_ggor_148, retro_ggor_951,
Macaca mulatta ENSMMUG00000018783 ortholog_one2one 11 retrogenes
retro_mmul_1093, retro_mmul_1296, retro_mmul_2057, retro_mmul_2164, retro_mmul_2298, retro_mmul_495, retro_mmul_568, retro_mmul_603, retro_mmul_792, retro_mmul_804, retro_mmul_966,
Monodelphis domestica ENSMODG00000013605 ortholog_one2many 6 retrogenes
retro_mdom_1618, retro_mdom_176, retro_mdom_1937, retro_mdom_1988, retro_mdom_948, retro_mdom_970,
Mustela putorius furo ENSMPUG00000011870 ortholog_one2one 3 retrogenes
retro_mputfur_1112, retro_mputfur_1287, retro_mputfur_892,
Mus musculus ENSMUSG00000038412 ortholog_one2many 1 retrogene
retro_mmus_249,
Otolemur garnettii ENSOGAG00000011358 ortholog_one2one 3 retrogenes
retro_ogar_1546, retro_ogar_2641, retro_ogar_2844,
Ochotona princeps ENSOPRG00000016072 ortholog_one2one 1 retrogene
retro_opri_564,
Pan troglodytes ENSPTRG00000014802 ortholog_one2many 1 retrogene
retro_ptro_89,
Rattus norvegicus ENSRNOG00000019428 ortholog_one2many 1 retrogene
retro_rnor_36,
Sus scrofa ENSSSCG00000011290 ortholog_one2one 1 retrogene
retro_sscr_1026,
Ictidomys tridecemlineatus ENSSTOG00000009681 ortholog_one2one 3 retrogenes
retro_itri_1636, retro_itri_775, retro_itri_879,
Tupaia belangeri ENSTBEG00000002324 ortholog_one2one 5 retrogenes
retro_tbel_1136, retro_tbel_1451, retro_tbel_1608, retro_tbel_1991, retro_tbel_4525,
Tursiops truncatus ENSTTRG00000009760 ortholog_one2one 8 retrogenes
retro_ttru_1001, retro_ttru_1090, retro_ttru_120, retro_ttru_1292, retro_ttru_330, retro_ttru_362, retro_ttru_632, retro_ttru_79,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_322 74.74 100.00
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2. retro_pabe_398 67.74 98.92
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3. retro_pabe_434 91.40 100.00
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4. retro_pabe_672 86.02 100.00
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5. retro_pabe_841 81.91 100.00
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6. retro_pabe_1014 79.45 78.49
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7. retro_pabe_1096 60.87 97.85
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8. retro_pabe_1776 71.28 100.00
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9. retro_pabe_2159 68.42 100.00
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10. retro_pabe_2196 69.15 100.00
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11. retro_pabe_2462 95.70 100.00
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12. retro_pabe_2707 78.49 100.00
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13. retro_pabe_3136 77.66 100.00
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14. retro_pabe_3199 90.32 100.00
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15. retro_pabe_3269 78.49 100.00
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16. retro_pabe_3348 78.49 98.92
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Download FASTA sequences of all ENSPPYG00000013974 retrocopies