RetrogeneDB ID: | retro_cpor_314 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_120:58576..58842(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HIGD1A | ||
Ensembl ID: | ENSCPOG00000000703 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.12 % |
Parental protein coverage: | 98.92 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MSSNTDVSLSSYDEDQGSKLIRKAKEAPFVPIGMAGFAAIVAYGLYRLKSRGDTKMSVHLIHMRVAAQGF |
M..NTDVSLSSY.EDQGSKLI.K...APFVP.GMAG.AA.V.YGLY.L.SRG.TK.S.HLIH..VAAQGF | |
Retrocopy | MANNTDVSLSSYNEDQGSKLIQK---APFVPTGMAGLAAVVTYGLYKLRSRGNTKISIHLIHTHVAAQGF |
Parental | VV-GAMTLGMGYSLYREFWAKPK |
.V.GA.TLG.GYS.Y.E.WAKPK | |
Retrocopy | IV<GAVTLGVGYSWYQEVWAKPK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 20 .48 RPM |
SRP017611_kidney | 0 .00 RPM | 26 .59 RPM |
SRP017611_liver | 0 .00 RPM | 18 .59 RPM |
SRP040447_lung | 0 .00 RPM | 20 .56 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 31 .37 RPM |