RetrogeneDB ID: | retro_pabe_1096 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 14:30580392..30580661(+) | ||
Located in intron of: | ENSPPYG00000005722 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HIGD1A | ||
Ensembl ID: | ENSPPYG00000013974 | ||
Aliases: | None | ||
Description: | HIG1 domain family member 1A [Source:UniProtKB/Swiss-Prot;Acc:Q5NVQ1] |
Percent Identity: | 60.87 % |
Parental protein coverage: | 97.85 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | TDTGVSLPSYEEDQGSKLIRKAKEAPFVPVGIAGFAAIVAYG-LYKLKSRGNTKMSIHLIHMRVAAQGFV |
T.T.VSL.SY..DQ..K.I.KAKEA.FVP.....F......G..YKLKSR.N.KMS.HLIHM.VAAQGFV | |
Retrocopy | TNTDVSLSSYD-DQEFKHIQKAKEALFVPYWNSRFCSNCCSG<IYKLKSRRNIKMSLHLIHMHVAAQGFV |
Parental | VGAMTVGMGYSMYREFWAKPKP |
.G.MT....YSM..E.WAKPKP | |
Retrocopy | MGTMTASVNYSMH*ELWAKPKP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .06 RPM | 49 .82 RPM |
SRP007412_cerebellum | 0 .00 RPM | 51 .44 RPM |
SRP007412_heart | 0 .00 RPM | 154 .94 RPM |
SRP007412_kidney | 0 .07 RPM | 74 .75 RPM |
SRP007412_liver | 0 .00 RPM | 47 .86 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1313 |
Gorilla gorilla | retro_ggor_1025 |
Macaca mulatta | retro_mmul_2164 |