RetrogeneDB ID: | retro_ecab_755 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 30:10724054..10724333(-) | ||
Located in intron of: | ENSECAG00000024459 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HIGD1A | ||
Ensembl ID: | ENSECAG00000010978 | ||
Aliases: | None | ||
Description: | HIG1 hypoxia inducible domain family, member 1A [Source:HGNC Symbol;Acc:29527] |
Percent Identity: | 92.47 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSTNTDVSLSSYDEDQGSKLIRKAKEAPFVPVGMAGFAAIVAYGLYKLKSRGNTKMSVHLIHMRVAAQGF |
MSTNTDVSLSS.DEDQGSKLI.KAKEAPFVP.GMAGFA.IVA.GLYKLKSRGNTKMS.HLIHMRVAAQGF | |
Retrocopy | MSTNTDVSLSSCDEDQGSKLIQKAKEAPFVPIGMAGFAVIVACGLYKLKSRGNTKMSIHLIHMRVAAQGF |
Parental | VVGAMTLGMGYHMYQEFWAKPKP |
VVGAMTLGMGYHMYQEFW.KPKP | |
Retrocopy | VVGAMTLGMGYHMYQEFWEKPKP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .12 RPM | 8 .03 RPM |
SRP021940_cerebellum | 0 .16 RPM | 25 .19 RPM |
SRP021940_embryo | 0 .36 RPM | 8 .18 RPM |
SRP021940_placental_villous | 0 .29 RPM | 22 .47 RPM |
SRP021940_synovial_membrane | 0 .36 RPM | 9 .77 RPM |
SRP021940_testis | 1 .21 RPM | 31 .91 RPM |