Parental gene: | FAM213A, ENSPPYG00000025862 |
| Aliases: | None |
| Description: | family with sequence similarity 213, member A [Source:HGNC Symbol;Acc:28651] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 10:54788306..54811942(-) |
>ENSPPYG00000025862
ATGTCTTTCCTCCAGGACCCAAGTTTCTTCACCATGGGGATGTGGTCCATTGGTGCAGGAGCCCTGGGGGCTGCTGCCTT
GGCATTGCTGCTTGCCAAAACAGACGTGTTTCTGTCCAAGCCCCAGAAAGCGGCCCTGGAGTACCTGGAGGATATAGACC
TGAAAACACTGGAGAAGGAACCGAGGACTTTGAAAGCAAAGGAGCTATGGGAAAAAAATGGAGCTGTGATTATGGCCGTG
CGGAGGCCAGGCTGTTTCCTCTGTCGAGAGGAAGCTGCGGATCTGTCCTCCCTGAAAAGCATGTTGGACCAGCTGGGCGT
CCCCCTCTATGCAGTGGTAAAAGAGCACATCAGGACCGAAGTGAAGGATTTCCAGCCTTATTTCAAAGGAGAAATCTTCC
TGGATGAAAAGAAAAAGTTCTATGGTCCACAAAGGCGGAAGATGATGTTTATGGGATTTATCCGTCTGGGAGTATGGTAC
AACTTCTTCCGAGCCTGGAATGGAGGCTTCTCTGGAAACCTGGAAGGAGAAGGCTTCATCCTTGGGGGAGTTTTCGTGGT
GGGATCAGGAAAGCAGGGCATTCTTCTCGAGCACCGAGAGAAAGAATTTGGAGACAAAGTAAACCTACTTTCTGTTCTGG
AAGCTGCTAAGATGATCAAACCACAGACTTTGGCCTCAGAGAAAAAATGA
ATGTCTTTCCTCCAGGACCCAAGTTTCTTCACCATGGGGATGTGGTCCATTGGTGCAGGAGCCCTGGGGGCTGCTGCCTT
GGCATTGCTGCTTGCCAAAACAGACGTGTTTCTGTCCAAGCCCCAGAAAGCGGCCCTGGAGTACCTGGAGGATATAGACC
TGAAAACACTGGAGAAGGAACCGAGGACTTTGAAAGCAAAGGAGCTATGGGAAAAAAATGGAGCTGTGATTATGGCCGTG
CGGAGGCCAGGCTGTTTCCTCTGTCGAGAGGAAGCTGCGGATCTGTCCTCCCTGAAAAGCATGTTGGACCAGCTGGGCGT
CCCCCTCTATGCAGTGGTAAAAGAGCACATCAGGACCGAAGTGAAGGATTTCCAGCCTTATTTCAAAGGAGAAATCTTCC
TGGATGAAAAGAAAAAGTTCTATGGTCCACAAAGGCGGAAGATGATGTTTATGGGATTTATCCGTCTGGGAGTATGGTAC
AACTTCTTCCGAGCCTGGAATGGAGGCTTCTCTGGAAACCTGGAAGGAGAAGGCTTCATCCTTGGGGGAGTTTTCGTGGT
GGGATCAGGAAAGCAGGGCATTCTTCTCGAGCACCGAGAGAAAGAATTTGGAGACAAAGTAAACCTACTTTCTGTTCTGG
AAGCTGCTAAGATGATCAAACCACAGACTTTGGCCTCAGAGAAAAAATGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 36 .66 RPM |
| SRP007412_cerebellum | 8 .63 RPM |
| SRP007412_heart | 7 .62 RPM |
| SRP007412_kidney | 21 .48 RPM |
| SRP007412_liver | 15 .52 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000000813 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000003657 | ortholog_one2one | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000001981 | ortholog_one2one | 3 retrogenes | |
| Homo sapiens | ENSG00000122378 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000013246 | ortholog_one2one | 2 retrogenes | |
| Microcebus murinus | ENSMICG00000007485 | ortholog_one2one | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000021773 | ortholog_one2one | 3 retrogenes | |
| Mus musculus | ENSMUSG00000021792 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000013638 | ortholog_one2one | 7 retrogenes | |
| Procavia capensis | ENSPCAG00000009696 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000002685 | ortholog_one2one | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000011140 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_643 | 91.98 | 92.14 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_738 | 92.07 | 98.69 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_pabe_944 | 65.94 | 98.25 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_pabe_3345 | 86.76 | 58.95 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000025862 retrocopies