Parental gene:

FAM213A, ENSPPYG00000025862

Aliases:None
Description:family with sequence similarity 213, member A [Source:HGNC Symbol;Acc:28651]
Organism:Orangutan (Pongo abelii)
Coordinates:10:54788306..54811942(-)


>ENSPPYG00000025862
ATGTCTTTCCTCCAGGACCCAAGTTTCTTCACCATGGGGATGTGGTCCATTGGTGCAGGAGCCCTGGGGGCTGCTGCCTT
GGCATTGCTGCTTGCCAAAACAGACGTGTTTCTGTCCAAGCCCCAGAAAGCGGCCCTGGAGTACCTGGAGGATATAGACC
TGAAAACACTGGAGAAGGAACCGAGGACTTTGAAAGCAAAGGAGCTATGGGAAAAAAATGGAGCTGTGATTATGGCCGTG
CGGAGGCCAGGCTGTTTCCTCTGTCGAGAGGAAGCTGCGGATCTGTCCTCCCTGAAAAGCATGTTGGACCAGCTGGGCGT
CCCCCTCTATGCAGTGGTAAAAGAGCACATCAGGACCGAAGTGAAGGATTTCCAGCCTTATTTCAAAGGAGAAATCTTCC
TGGATGAAAAGAAAAAGTTCTATGGTCCACAAAGGCGGAAGATGATGTTTATGGGATTTATCCGTCTGGGAGTATGGTAC
AACTTCTTCCGAGCCTGGAATGGAGGCTTCTCTGGAAACCTGGAAGGAGAAGGCTTCATCCTTGGGGGAGTTTTCGTGGT
GGGATCAGGAAAGCAGGGCATTCTTCTCGAGCACCGAGAGAAAGAATTTGGAGACAAAGTAAACCTACTTTCTGTTCTGG
AAGCTGCTAAGATGATCAAACCACAGACTTTGGCCTCAGAGAAAAAATGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 36 .66 RPM
SRP007412_cerebellum 8 .63 RPM
SRP007412_heart 7 .62 RPM
SRP007412_kidney 21 .48 RPM
SRP007412_liver 15 .52 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000000813 ortholog_one2one 1 retrogene
retro_chof_878,
Callithrix jacchus ENSCJAG00000003657 ortholog_one2one 1 retrogene
retro_cjac_3312,
Dasypus novemcinctus ENSDNOG00000001981 ortholog_one2one 3 retrogenes
retro_dnov_1843, retro_dnov_1901, retro_dnov_868,
Homo sapiens ENSG00000122378 ortholog_one2one 2 retrogenes
retro_hsap_1135, retro_hsap_4076,
Gorilla gorilla ENSGGOG00000013246 ortholog_one2one 2 retrogenes
retro_ggor_2733, retro_ggor_886,
Microcebus murinus ENSMICG00000007485 ortholog_one2one 2 retrogenes
retro_mmur_1346, retro_mmur_1481,
Macaca mulatta ENSMMUG00000021773 ortholog_one2one 3 retrogenes
retro_mmul_2351, retro_mmul_2409, retro_mmul_881,
Mus musculus ENSMUSG00000021792 ortholog_one2one 1 retrogene
retro_mmus_2227,
Otolemur garnettii ENSOGAG00000013638 ortholog_one2one 7 retrogenes
retro_ogar_2126, retro_ogar_2435, retro_ogar_2562, retro_ogar_3327, retro_ogar_420, retro_ogar_580, retro_ogar_784,
Procavia capensis ENSPCAG00000009696 ortholog_one2one 1 retrogene
retro_pcap_281,
Pan troglodytes ENSPTRG00000002685 ortholog_one2one 2 retrogenes
retro_ptro_2763, retro_ptro_774,
Rattus norvegicus ENSRNOG00000011140 ortholog_one2one 1 retrogene
retro_rnor_1517,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_643 91.98 92.14
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2. retro_pabe_738 92.07 98.69
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3. retro_pabe_944 65.94 98.25
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4. retro_pabe_3345 86.76 58.95
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Download FASTA sequences of all ENSPPYG00000025862 retrocopies