RetrogeneDB ID: | retro_ogar_2562 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873634.1:2751005..2751679(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOGAG00000029632 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FAM213A | ||
Ensembl ID: | ENSOGAG00000013638 | ||
Aliases: | None | ||
Description: | family with sequence similarity 213, member A [Source:HGNC Symbol;Acc:28651] |
Percent Identity: | 90.27 % |
Parental protein coverage: | 98.25 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | QDPSFFTMGMWSIGAGALGAAALALLLANTDVFLSKPQRAALEYLEDIDLKTLDKEPRTFKAKELWEKNG |
QDPSFFTM.MWSIGAGALGAAALALLLANTDVFLSKPQRAALEYLED..LKTLDKEPRTFKAKELWEKNG | |
Retrocopy | QDPSFFTMRMWSIGAGALGAAALALLLANTDVFLSKPQRAALEYLEDRALKTLDKEPRTFKAKELWEKNG |
Parental | AVIMAVRRPGCFLCREEAADLSSLKPKLEELGIPLYAVVKEQIGTEVKDFQPYFKGEIFLDEKK-RFYGP |
AVI.AVRRPGCFLCREEAADLSSLKPKLEELGI.L.AVVKEQIGTEVKDFQ.Y.KGEIFLDEKK..FYGP | |
Retrocopy | AVITAVRRPGCFLCREEAADLSSLKPKLEELGILLNAVVKEQIGTEVKDFQSYLKGEIFLDEKK<KFYGP |
Parental | QRRKMMFMGFIRLGVWYNFFRAWNGGYSGNLEGEGFILGGVFVVGSGKQXXXXXXXXXXFGDKVNLLSVL |
QR.KMMFMGFIRLGVWYNFFRAWNGGYSGNLEGEGFILGGVFVVGSGKQ..........FGDKVN.LSVL | |
Retrocopy | QRWKMMFMGFIRLGVWYNFFRAWNGGYSGNLEGEGFILGGVFVVGSGKQGILPEHREKEFGDKVNPLSVL |
Parental | EAARKIKSQASNSENK |
EAARKIKSQASNSENK | |
Retrocopy | EAARKIKSQASNSENK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000000813 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000003657 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000001981 | 3 retrocopies | |
Homo sapiens | ENSG00000122378 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000013246 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000007485 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000021773 | 3 retrocopies | |
Mus musculus | ENSMUSG00000021792 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000013638 | 7 retrocopies |
retro_ogar_2126, retro_ogar_2435, retro_ogar_2562 , retro_ogar_3327, retro_ogar_420, retro_ogar_580, retro_ogar_784,
|
Procavia capensis | ENSPCAG00000009696 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000025862 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000002685 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000011140 | 1 retrocopy |