RetrogeneDB ID: | retro_ogar_3327 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873779.1:1136769..1137223(-) | ||
Located in intron of: | ENSOGAG00000006434 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FAM213A | ||
Ensembl ID: | ENSOGAG00000013638 | ||
Aliases: | None | ||
Description: | family with sequence similarity 213, member A [Source:HGNC Symbol;Acc:28651] |
Percent Identity: | 59.01 % |
Parental protein coverage: | 68.12 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 5 |
Parental | RTFKAKELWEKNGAVIMAVRRPGCFLCR-EEAADLSSLKP-KLEELGI-PLYAVVKEQIGTEVKDFQPYF |
RTFKA.E..EK..AV..A...PGC.LC..EEAADLSSLKP....EL...P.....K.QIGT...D.QPYF | |
Retrocopy | RTFKAREQPEKKRAVFIAGLSPGCLLCQ<EEAADLSSLKP<RVDELRV<PPLSRGKGQIGT---DMQPYF |
Parental | KGEIFLDEKKRFYGPQRRKMMFMGFIRLGVWYNFFRAWNG-GYSGN-LEGEGFILGGVFVVGSGKQXXXX |
K.EIF..EKK..YGPQR.KMMF.G.I.LGV...FF.AWN..G.SGN...G.GFI..GV.VVGSGKQ.... | |
Retrocopy | KEEIFREEKKKLYGPQRQKMMFIGSIHLGV*NDFFQAWNE<GCSGN<PKGDGFIFRGVSVVGSGKQGILP |
Parental | XXXXXXFGDKVNLLSVLEAAR |
......FGDKVN.LS..EAAR | |
Retrocopy | THQEK*FGDKVNPLSPPEAAR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000000813 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000003657 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000001981 | 3 retrocopies | |
Homo sapiens | ENSG00000122378 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000013246 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000007485 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000021773 | 3 retrocopies | |
Mus musculus | ENSMUSG00000021792 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000013638 | 7 retrocopies |
retro_ogar_2126, retro_ogar_2435, retro_ogar_2562, retro_ogar_3327 , retro_ogar_420, retro_ogar_580, retro_ogar_784,
|
Procavia capensis | ENSPCAG00000009696 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000025862 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000002685 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000011140 | 1 retrocopy |