RetrogeneDB ID: | retro_mmur_1346 | ||
Retrocopylocation | Organism: | Mouse Lemur (Microcebus murinus) | |
Coordinates: | scaffold_46956:3707..4394(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FAM213A | ||
Ensembl ID: | ENSMICG00000007485 | ||
Aliases: | None | ||
Description: | family with sequence similarity 213, member A [Source:HGNC Symbol;Acc:28651] |
Percent Identity: | 94.76 % |
Parental protein coverage: | 98.25 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | QDPSFFTMGMWSIGAGALGAAALALLLANTDVFLSKPQKAALEYLEDIDLKTLEKEPRTFKAKELWEKNG |
.DPSFFTMGMWSIGAGALGAAALALLLANTDVFLSKPQKAALEYLEDIDLKTLEKEPRTFKAKELWEKNG | |
Retrocopy | RDPSFFTMGMWSIGAGALGAAALALLLANTDVFLSKPQKAALEYLEDIDLKTLEKEPRTFKAKELWEKNG |
Parental | AVIMAVRRPGCFLCREEAADLSSLKPKLDELGVPLYAVVKEHVRTEVKDFQPYFKGEIFLDEKKRFYGPQ |
AVIMAVRRPGCFLCREEAADLSSLKPKLDELGVPLYAVVKEH.RTEVKDFQPYFK..IFLDEKKRFYGPQ | |
Retrocopy | AVIMAVRRPGCFLCREEAADLSSLKPKLDELGVPLYAVVKEHIRTEVKDFQPYFKEGIFLDEKKRFYGPQ |
Parental | RRKMMFMGFIRLGV----WYNFFRAWNGGFSGNLEGEGFILGGVFVVGPGKQGILLEHREKEFGDKVNPL |
RRKMMFMGFI.LGV....WYNFF.AWN.GFSGNLEGEGFILGGVFVVGPGKQGILLEHREKEFGDKVNPL | |
Retrocopy | RRKMMFMGFIHLGVGVGRWYNFF*AWNEGFSGNLEGEGFILGGVFVVGPGKQGILLEHREKEFGDKVNPL |
Parental | SVLEAARKIKPQTSTSEKK |
SV.EAARKIKPQTSTSEKK | |
Retrocopy | SVWEAARKIKPQTSTSEKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000000813 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000003657 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000001981 | 3 retrocopies | |
Homo sapiens | ENSG00000122378 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000013246 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000007485 | 2 retrocopies |
retro_mmur_1346 , retro_mmur_1481,
|
Macaca mulatta | ENSMMUG00000021773 | 3 retrocopies | |
Mus musculus | ENSMUSG00000021792 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000013638 | 7 retrocopies | |
Procavia capensis | ENSPCAG00000009696 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000025862 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000002685 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000011140 | 1 retrocopy |