Parental gene:

COX6A1, ENSPTRG00000005532

Aliases:None
Description:cytochrome c oxidase subunit VIa polypeptide 1 [Source:HGNC Symbol;Acc:2277]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:12:121040260..121042888(+)


>ENSPTRG00000005532
ATGGCGGTAGTTGGTGTGTCCTCGGTTTCTCGGCTGCTGGGTCGGTCCCGCCCACAGCTGGGGCGGCCTATGTCGAGTGG
CGCCCATGGCGAAGAGGGCTCAGCTCGCATGTGGAAGACTCTCACCTTCTTCGTCGCGCTCCCCGGGGTGGCAGTCAGCA
TGCTGAATGTGTACCTGAAGTCGCACCACGGAGAGCACGAGAGACCCGAGTTCATCGCCTACCCCCATCTCCGCATCAGG
ACCAAGCCGTTTCCCTGGGGAGATGGTAACCATACTCTATTCCATAACCCTCATGTGAATCCACTTCCAACTGGCTATGA
AGATGAATAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 186 .88 RPM
SRP007412_cerebellum 75 .78 RPM
SRP007412_heart 15 .24 RPM
SRP007412_kidney 144 .67 RPM
SRP007412_liver 116 .44 RPM
SRP007412_testis 38 .25 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000012788 ortholog_many2many 1 retrogene
retro_btau_229,
Canis familiaris ENSCAFG00000031458 ortholog_many2many 1 retrogene
retro_cfam_506,
Choloepus hoffmanni ENSCHOG00000009222 ortholog_many2many 2 retrogenes
retro_chof_2085, retro_chof_2579,
Cavia porcellus ENSCPOG00000006426 ortholog_one2many 1 retrogene
retro_cpor_1265,
Equus caballus ENSECAG00000012512 ortholog_one2many 2 retrogenes
retro_ecab_578, retro_ecab_845,
Echinops telfairi ENSETEG00000016826 ortholog_one2many 1 retrogene
retro_etel_1482,
Felis catus ENSFCAG00000031188 ortholog_one2many 9 retrogenes
retro_fcat_1049, retro_fcat_1399, retro_fcat_1505, retro_fcat_1518, retro_fcat_1653, retro_fcat_1891, retro_fcat_318, retro_fcat_753, retro_fcat_886,
Homo sapiens ENSG00000111775 ortholog_one2one 1 retrogene
retro_hsap_25,
Gorilla gorilla ENSGGOG00000014101 ortholog_one2one 2 retrogenes
retro_ggor_176, retro_ggor_2527,
Myotis lucifugus ENSMLUG00000010330 ortholog_one2many 4 retrogenes
retro_mluc_1127, retro_mluc_1405, retro_mluc_1879, retro_mluc_465,
Macaca mulatta ENSMMUG00000016000 ortholog_one2many 2 retrogenes
retro_mmul_127, retro_mmul_2535,
Nomascus leucogenys ENSNLEG00000015644 ortholog_one2many 4 retrogenes
retro_nleu_1116, retro_nleu_412, retro_nleu_484, retro_nleu_985,
Oryctolagus cuniculus ENSOCUG00000009873 ortholog_many2many 6 retrogenes
retro_ocun_1320, retro_ocun_1668, retro_ocun_1700, retro_ocun_174, retro_ocun_1898, retro_ocun_1928,
Otolemur garnettii ENSOGAG00000003561 ortholog_many2many 18 retrogenes
retro_ogar_1068, retro_ogar_111, retro_ogar_1150, retro_ogar_1466, retro_ogar_188, retro_ogar_1904, retro_ogar_2063, retro_ogar_2312, retro_ogar_2933, retro_ogar_3021, retro_ogar_3106, retro_ogar_3190, retro_ogar_3227, retro_ogar_3240, retro_ogar_346, retro_ogar_852, retro_ogar_871, retro_ogar_872,
Pongo abelii ENSPPYG00000005028 ortholog_one2many 4 retrogenes
retro_pabe_2905, retro_pabe_3087, retro_pabe_3206, retro_pabe_713,
Pteropus vampyrus ENSPVAG00000002226 ortholog_one2many 3 retrogenes
retro_pvam_1060, retro_pvam_790, retro_pvam_910,
Rattus norvegicus ENSRNOG00000001170 ortholog_one2many 2 retrogenes
retro_rnor_2581, retro_rnor_2680,
Tupaia belangeri ENSTBEG00000008018 ortholog_one2many 4 retrogenes
retro_tbel_2490, retro_tbel_3010, retro_tbel_3167, retro_tbel_395,
Tarsius syrichta ENSTSYG00000011541 ortholog_one2many 1 retrogene
retro_tsyr_1025,
Tursiops truncatus ENSTTRG00000000142 ortholog_one2many 2 retrogenes
retro_ttru_1873, retro_ttru_889,
Vicugna pacos ENSVPAG00000010359 ortholog_one2many 1 retrogene
retro_vpac_218,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_54 97.25 100.00
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2. retro_ptro_311 51.06 84.40
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3. retro_ptro_556 62.89 86.24
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Download FASTA sequences of all ENSPTRG00000005532 retrocopies