RetrogeneDB ID: | retro_ecab_578 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 21:34006866..34007168(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000012512 | ||
Aliases: | None | ||
Description: | Cytochrome c oxidase subunit 6A, mitochondrial [Source:UniProtKB/TrEMBL;Acc:F6RVC7] |
Percent Identity: | 58.82 % |
Parental protein coverage: | 90. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | GLLGRSRAQLGRPMSSGAHGEEGSARMWKALTY--FVALPGVGVSMLNVFLKSHQGEHER-PEFVAYPHL |
GLL..S..QLG.P.S..A..EEGSA..WK......F..L.GV.VSML..FLKS.QGE....P.F.AYP.L | |
Retrocopy | GLLDGSLSQLGLPVSRCAPNEEGSACTWKHMEVLIFCMLLGVEVSMLTAFLKSQQGECKN<PKFFAYPYL |
Parental | RIRSKPFPWGDGNHTLFHNSHVNPLPTGYEDE |
..RSK.FPWGDGNHTLFHN.H..PL....EDE | |
Retrocopy | FLRSKCFPWGDGNHTLFHNPHAKPLLPCNEDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 52 .71 RPM |
SRP021940_cerebellum | 0 .00 RPM | 243 .61 RPM |
SRP021940_embryo | 0 .00 RPM | 121 .85 RPM |
SRP021940_placental_villous | 0 .00 RPM | 162 .28 RPM |
SRP021940_synovial_membrane | 0 .03 RPM | 84 .14 RPM |
SRP021940_testis | 0 .00 RPM | 168 .36 RPM |