RetrogeneDB ID: | retro_ecab_845 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 5:90470876..90471140(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000012512 | ||
Aliases: | None | ||
Description: | Cytochrome c oxidase subunit 6A, mitochondrial [Source:UniProtKB/TrEMBL;Acc:F6RVC7] |
Percent Identity: | 61.29 % |
Parental protein coverage: | 81.82 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | LGRPMSSGA-HGEEGSARMWKALT-YFVALPGVGVSMLNVFLKSHQGEHERPEFVAYPHLRIRSKPFPWG |
.GRP......HG.EGSA..WK.LT.Y.V..P.VGVS..N.FLKSHQGEH.R..F..Y.HL.IR.KPFPWG | |
Retrocopy | MGRPLLTEC<HGAEGSAFRWKVLT<YLVTRPLVGVSKQNTFLKSHQGEHQR-QFTGYHHLHIRPKPFPWG |
Parental | DGNHTLFHN-SHVNPLPTGYEDE |
DGNHTLFHN....N.L.T..ED. | |
Retrocopy | DGNHTLFHN<PPANQLLTVCEDD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 52 .71 RPM |
SRP021940_cerebellum | 0 .00 RPM | 243 .61 RPM |
SRP021940_embryo | 0 .00 RPM | 121 .85 RPM |
SRP021940_placental_villous | 0 .00 RPM | 162 .28 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 84 .14 RPM |
SRP021940_testis | 0 .00 RPM | 168 .36 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_311 |