Parental gene: | RPL36, ENSPTRG00000010338 |
| Aliases: | None |
| Description: | Pan troglodytes ribosomal protein L36 (RPL36), mRNA. [Source:RefSeq mRNA;Acc:NM_001252514] |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 19:5718117..5719645(+) |
>ENSPTRG00000010338
ATGGCCCTACGCTACCCTATGGCCGTGGGCCTCAACAAGGGCCACAAAGTGACCAAGAACGTGAGCAAGCCCAGGCACAG
CCGCCGCCGCGGGCGTCTGACCAAACACACCAAGTTCGTGCGGGACATGATTCGGGAGGTGTGTGGCTTTGCCCCGTACG
AGCGGCGCGCCATGGAGTTACTGAAGGTCTCCAAGGACAAACGGGCCCTCAAGTTTATCAAGAAAAGGGTGGGGACGCAC
ATCCGCGCCAAGAGGAAGCGGGAGGAGCTGAGCAACGTACTGGCCGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGA
ATGGCCCTACGCTACCCTATGGCCGTGGGCCTCAACAAGGGCCACAAAGTGACCAAGAACGTGAGCAAGCCCAGGCACAG
CCGCCGCCGCGGGCGTCTGACCAAACACACCAAGTTCGTGCGGGACATGATTCGGGAGGTGTGTGGCTTTGCCCCGTACG
AGCGGCGCGCCATGGAGTTACTGAAGGTCTCCAAGGACAAACGGGCCCTCAAGTTTATCAAGAAAAGGGTGGGGACGCAC
ATCCGCGCCAAGAGGAAGCGGGAGGAGCTGAGCAACGTACTGGCCGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 127 .02 RPM |
| SRP007412_cerebellum | 50 .22 RPM |
| SRP007412_heart | 23 .58 RPM |
| SRP007412_kidney | 157 .46 RPM |
| SRP007412_liver | 102 .95 RPM |
| SRP007412_testis | 7 .59 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000012349 | ortholog_one2one | 6 retrogenes | |
| Bos taurus | ENSBTAG00000001794 | possible_ortholog | 3 retrogenes | |
| Callithrix jacchus | ENSCJAG00000017072 | ortholog_one2one | 2 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000005163 | ortholog_one2one | 8 retrogenes | |
| Gorilla gorilla | ENSGGOG00000015365 | possible_ortholog | 11 retrogenes | |
| Latimeria chalumnae | ENSLACG00000015161 | ortholog_one2one | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000002743 | ortholog_one2many | 4 retrogenes | |
| Monodelphis domestica | ENSMODG00000001275 | ortholog_one2many | 2 retrogenes | |
| Mustela putorius furo | ENSMPUG00000006166 | possible_ortholog | 6 retrogenes | |
| Mus musculus | ENSMUSG00000057863 | possible_ortholog | 9 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000013689 | ortholog_one2one | 15 retrogenes | |
| Otolemur garnettii | ENSOGAG00000027049 | possible_ortholog | 12 retrogenes | |
| Rattus norvegicus | ENSRNOG00000033473 | possible_ortholog | 5 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000013492 | ortholog_one2one | 8 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000020518 | possible_ortholog | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_399 | 65.98 | 90.48 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_721 | 57.94 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ptro_982 | 91.43 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_ptro_1334 | 79.05 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_ptro_1406 | 83.96 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_ptro_1430 | 83.84 | 94.29 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_ptro_1506 | 75.73 | 98.10 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_ptro_1989 | 80.00 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_ptro_2196 | 60.19 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 10. | retro_ptro_2555 | 86.79 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 11. | retro_ptro_2647 | 77.06 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 12. | retro_ptro_2858 | 91.43 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 13. | retro_ptro_3157 | 80.95 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000010338 retrocopies