Parental gene:

RPL36, ENSPTRG00000010338

Aliases:None
Description:Pan troglodytes ribosomal protein L36 (RPL36), mRNA. [Source:RefSeq mRNA;Acc:NM_001252514]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:19:5718117..5719645(+)


>ENSPTRG00000010338
ATGGCCCTACGCTACCCTATGGCCGTGGGCCTCAACAAGGGCCACAAAGTGACCAAGAACGTGAGCAAGCCCAGGCACAG
CCGCCGCCGCGGGCGTCTGACCAAACACACCAAGTTCGTGCGGGACATGATTCGGGAGGTGTGTGGCTTTGCCCCGTACG
AGCGGCGCGCCATGGAGTTACTGAAGGTCTCCAAGGACAAACGGGCCCTCAAGTTTATCAAGAAAAGGGTGGGGACGCAC
ATCCGCGCCAAGAGGAAGCGGGAGGAGCTGAGCAACGTACTGGCCGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 127 .02 RPM
SRP007412_cerebellum 50 .22 RPM
SRP007412_heart 23 .58 RPM
SRP007412_kidney 157 .46 RPM
SRP007412_liver 102 .95 RPM
SRP007412_testis 7 .59 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000012349 ortholog_one2one 6 retrogenes
retro_amel_1222, retro_amel_1581, retro_amel_1935, retro_amel_748, retro_amel_799, retro_amel_835,
Bos taurus ENSBTAG00000001794 possible_ortholog 3 retrogenes
retro_btau_139, retro_btau_238, retro_btau_81,
Callithrix jacchus ENSCJAG00000017072 ortholog_one2one 2 retrogenes
retro_cjac_280, retro_cjac_52,
Dasypus novemcinctus ENSDNOG00000005163 ortholog_one2one 8 retrogenes
retro_dnov_19, retro_dnov_2160, retro_dnov_311, retro_dnov_313, retro_dnov_457, retro_dnov_578, retro_dnov_595, retro_dnov_631,
Gorilla gorilla ENSGGOG00000015365 possible_ortholog 11 retrogenes
retro_ggor_1514, retro_ggor_1613, retro_ggor_180, retro_ggor_2211, retro_ggor_2535, retro_ggor_2620, retro_ggor_34, retro_ggor_487, retro_ggor_60, retro_ggor_82, retro_ggor_885,
Latimeria chalumnae ENSLACG00000015161 ortholog_one2one 1 retrogene
retro_lcha_47,
Macropus eugenii ENSMEUG00000002743 ortholog_one2many 4 retrogenes
retro_meug_1318, retro_meug_176, retro_meug_261, retro_meug_283,
Monodelphis domestica ENSMODG00000001275 ortholog_one2many 2 retrogenes
retro_mdom_1353, retro_mdom_148,
Mustela putorius furo ENSMPUG00000006166 possible_ortholog 6 retrogenes
retro_mputfur_1423, retro_mputfur_150, retro_mputfur_1562, retro_mputfur_747, retro_mputfur_749, retro_mputfur_773,
Mus musculus ENSMUSG00000057863 possible_ortholog 9 retrogenes
retro_mmus_151, retro_mmus_1601, retro_mmus_1900, retro_mmus_1912, retro_mmus_193, retro_mmus_2864, retro_mmus_3379, retro_mmus_38, retro_mmus_652,
Nomascus leucogenys ENSNLEG00000013689 ortholog_one2one 15 retrogenes
retro_nleu_1132, retro_nleu_1244, retro_nleu_1415, retro_nleu_1645, retro_nleu_1699, retro_nleu_1788, retro_nleu_183, retro_nleu_1899, retro_nleu_2032, retro_nleu_2123, retro_nleu_242, retro_nleu_2451, retro_nleu_2503, retro_nleu_2835, retro_nleu_757,
Otolemur garnettii ENSOGAG00000027049 possible_ortholog 12 retrogenes
retro_ogar_1348, retro_ogar_18, retro_ogar_184, retro_ogar_2256, retro_ogar_2278, retro_ogar_2332, retro_ogar_2537, retro_ogar_2592, retro_ogar_3278, retro_ogar_358, retro_ogar_795, retro_ogar_888,
Rattus norvegicus ENSRNOG00000033473 possible_ortholog 5 retrogenes
retro_rnor_11, retro_rnor_17, retro_rnor_170, retro_rnor_369, retro_rnor_687,
Sarcophilus harrisii ENSSHAG00000013492 ortholog_one2one 8 retrogenes
retro_shar_185, retro_shar_347, retro_shar_543, retro_shar_557, retro_shar_592, retro_shar_615, retro_shar_716, retro_shar_819,
Ictidomys tridecemlineatus ENSSTOG00000020518 possible_ortholog 2 retrogenes
retro_itri_43, retro_itri_593,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_399 65.98 90.48
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2. retro_ptro_721 57.94 100.00
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3. retro_ptro_982 91.43 100.00
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4. retro_ptro_1334 79.05 100.00
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5. retro_ptro_1406 83.96 100.00
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6. retro_ptro_1430 83.84 94.29
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7. retro_ptro_1506 75.73 98.10
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8. retro_ptro_1989 80.00 100.00
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9. retro_ptro_2196 60.19 100.00
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10. retro_ptro_2555 86.79 100.00
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11. retro_ptro_2647 77.06 100.00
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12. retro_ptro_2858 91.43 100.00
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13. retro_ptro_3157 80.95 100.00
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Download FASTA sequences of all ENSPTRG00000010338 retrocopies