Parental gene:

HSPE1, ENSPTRG00000012774

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:2B:202188384..202191812(+)


>ENSPTRG00000012774
ATGGCAGGACAAGCGTTTAGAAAGTTTCTTCCACTCTTTGACCGAGTATTGGTTGAAAGGAGTGCTGCTGAAACTGTAAC
CAAAGGAGGCATTATGCTTCCAGAAAAATCTCAAGGAAAAGTATTGCAAGCAACAGTAGTCGCTGTTGGATCGGGTTCTA
AAGGAAAGGGTGGAGAGATTCAACCAGTTAGCGTGAAAGTTGGAGATAAAGTTCTTCTCCCAGAATATGGAGGCACCAAA
GTAGTTCTAGATGACAAGGATTATTTCCTATTTAGAGATGGTGACATTCTTGGAAAGTACGTAGACTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 33 .00 RPM
SRP007412_cerebellum 43 .05 RPM
SRP007412_heart 125 .59 RPM
SRP007412_kidney 129 .40 RPM
SRP007412_liver 156 .86 RPM
SRP007412_testis 45 .63 RPM



Species Parental gene accession Homology type Retrogenes number
Dasypus novemcinctus ENSDNOG00000013246 ortholog_one2one 27 retrogenes
retro_dnov_1088, retro_dnov_1117, retro_dnov_1214, retro_dnov_1375, retro_dnov_1391, retro_dnov_1405, retro_dnov_1412, retro_dnov_1428, retro_dnov_1445, retro_dnov_1546, retro_dnov_1647, retro_dnov_1652, retro_dnov_1686, retro_dnov_1821, retro_dnov_2176, retro_dnov_2291, retro_dnov_2413, retro_dnov_2569, retro_dnov_2625, retro_dnov_2652, retro_dnov_418, retro_dnov_481, retro_dnov_483, retro_dnov_490, retro_dnov_524, retro_dnov_554, retro_dnov_966,
Macaca mulatta ENSMMUG00000010491 ortholog_one2many 1 retrogene
retro_mmul_344,
Pongo abelii ENSPPYG00000025876 ortholog_one2one 1 retrogene
retro_pabe_179,
Sus scrofa ENSSSCG00000016078 ortholog_one2one 7 retrogenes
retro_sscr_103, retro_sscr_1059, retro_sscr_106, retro_sscr_1088, retro_sscr_294, retro_sscr_298, retro_sscr_401,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_287 91.76 82.35
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2. retro_ptro_374 90.00 98.04
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3. retro_ptro_667 83.33 100.00
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4. retro_ptro_726 72.92 92.16
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5. retro_ptro_786 94.12 100.00
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6. retro_ptro_926 95.10 100.00
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7. retro_ptro_1033 88.24 100.00
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8. retro_ptro_1117 94.17 100.00
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9. retro_ptro_1152 93.62 92.16
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10. retro_ptro_1591 65.71 100.00
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11. retro_ptro_1752 87.50 94.12
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12. retro_ptro_1907 64.18 61.76
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13. retro_ptro_1908 74.23 92.16
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14. retro_ptro_2343 79.61 100.00
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15. retro_ptro_2406 58.00 96.08
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16. retro_ptro_2485 70.87 100.00
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17. retro_ptro_2847 74.16 86.27
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Download FASTA sequences of all ENSPTRG00000012774 retrocopies