RetrogeneDB ID: | retro_dnov_1652 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_25706:10302..10599(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HSPE1 | ||
Ensembl ID: | ENSDNOG00000013246 | ||
Aliases: | None | ||
Description: | heat shock 10kDa protein 1 (chaperonin 10) [Source:HGNC Symbol;Acc:5269] |
Percent Identity: | 67.31 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | AEQAFRKFMPLFDRVLVE-RSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKG-KSGDIQPVS-VKVG |
A.QAF.K..PLFD.VL.E.RSA.ETV...GI.LPEKSQG.V.QA.VV.VG.GSKG.K.GDIQPV..V..G | |
Retrocopy | AGQAFGKCLPLFDPVLAE<RSAVETVIRRGILLPEKSQGQVSQAAVVVVGWGSKG<KGGDIQPVM<VEAG |
Parental | DKVLLPEYGGTKVVLDDKDYFLFRDGDILGKYID |
DK..LPE.GG..V.LDD.DY.LFRDGDIL.K..D | |
Retrocopy | DKI-LPEQGGIIVALDDGDYLLFRDGDILEKSVD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 58 .34 RPM |
SRP012922_cerebellum | 0 .00 RPM | 20 .90 RPM |
SRP012922_heart | 0 .00 RPM | 31 .56 RPM |
SRP012922_kidney | 0 .00 RPM | 108 .70 RPM |
SRP012922_liver | 0 .00 RPM | 78 .02 RPM |
SRP012922_lung | 0 .00 RPM | 35 .43 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 30 .46 RPM |
SRP012922_spleen | 0 .00 RPM | 62 .84 RPM |