Parental gene:

HSPE1, ENSDNOG00000013246

Aliases:None
Description:heat shock 10kDa protein 1 (chaperonin 10) [Source:HGNC Symbol;Acc:5269]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:scaffold_55615:13677..14878(+)


>ENSDNOG00000013246
GCAGAGCAGGCATTTAGAAAGTTTATGCCCCTCTTTGACCGAGTCTTGGTTGAAAGGAGTGCTGCCGAAACTGTAACCAA
AGGAGGCATTATGCTTCCAGAAAAATCTCAAGGAAAAGTATTGCAGGCAACAGTAGTAGCCGTTGGATCGGGATCTAAAG
GAAAGAGTGGAGATATTCAACCAGTTAGTGTGAAAGTAGGAGATAAAGTTCTTCTCCCAGAATATGGAGGCACCAAAGTA
GTTCTAGATGATAAGGATTATTTCTTATTTAGAGATGGTGACATTCTTGGGAAGTACATAGACTGA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 58 .34 RPM
SRP012922_cerebellum 20 .90 RPM
SRP012922_heart 31 .56 RPM
SRP012922_kidney 108 .70 RPM
SRP012922_liver 78 .02 RPM
SRP012922_lung 35 .43 RPM
SRP012922_quadricep_muscle 30 .46 RPM
SRP012922_spleen 62 .84 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000013769 ortholog_one2many 18 retrogenes
retro_amel_1027, retro_amel_1083, retro_amel_1084, retro_amel_1100, retro_amel_133, retro_amel_1504, retro_amel_1513, retro_amel_1623, retro_amel_1699, retro_amel_1819, retro_amel_199, retro_amel_23, retro_amel_269, retro_amel_310, retro_amel_329, retro_amel_491, retro_amel_506, retro_amel_922,
Bos taurus ENSBTAG00000012589 ortholog_one2one 4 retrogenes
retro_btau_1118, retro_btau_624, retro_btau_760, retro_btau_801,
Canis familiaris ENSCAFG00000010890 ortholog_one2many 4 retrogenes
retro_cfam_1768, retro_cfam_1883, retro_cfam_208, retro_cfam_556,
Callithrix jacchus ENSCJAG00000004008 ortholog_one2many 1 retrogene
retro_cjac_254,
Cavia porcellus ENSCPOG00000027474 ortholog_one2one 3 retrogenes
retro_cpor_1431, retro_cpor_273, retro_cpor_649,
Dipodomys ordii ENSDORG00000011071 ortholog_one2one 19 retrogenes
retro_dord_153, retro_dord_158, retro_dord_162, retro_dord_191, retro_dord_207, retro_dord_216, retro_dord_219, retro_dord_296, retro_dord_368, retro_dord_403, retro_dord_417, retro_dord_462, retro_dord_492, retro_dord_525, retro_dord_535, retro_dord_583, retro_dord_740, retro_dord_744, retro_dord_755,
Equus caballus ENSECAG00000026874 ortholog_one2one 1 retrogene
retro_ecab_716,
Erinaceus europaeus ENSEEUG00000005040 ortholog_one2one 6 retrogenes
retro_eeur_132, retro_eeur_278, retro_eeur_474, retro_eeur_611, retro_eeur_657, retro_eeur_698,
Felis catus ENSFCAG00000014455 ortholog_one2many 9 retrogenes
retro_fcat_114, retro_fcat_1174, retro_fcat_1406, retro_fcat_1686, retro_fcat_1723, retro_fcat_457, retro_fcat_681, retro_fcat_794, retro_fcat_97,
Homo sapiens ENSG00000115541 ortholog_one2one 18 retrogenes
retro_hsap_1066, retro_hsap_1152, retro_hsap_1351, retro_hsap_1524, retro_hsap_1646, retro_hsap_1703, retro_hsap_2248, retro_hsap_2402, retro_hsap_2480, retro_hsap_2812, retro_hsap_2813, retro_hsap_3455, retro_hsap_3540, retro_hsap_366, retro_hsap_3664, retro_hsap_4194, retro_hsap_495, retro_hsap_963,
Gorilla gorilla ENSGGOG00000027944 ortholog_one2many 17 retrogenes
retro_ggor_1051, retro_ggor_117, retro_ggor_1243, retro_ggor_1545, retro_ggor_157, retro_ggor_1676, retro_ggor_1821, retro_ggor_1956, retro_ggor_1957, retro_ggor_1958, retro_ggor_2331, retro_ggor_2391, retro_ggor_2476, retro_ggor_2492, retro_ggor_775, retro_ggor_841, retro_ggor_897,
Loxodonta africana ENSLAFG00000000057 ortholog_one2many 1 retrogene
retro_lafr_69,
Microcebus murinus ENSMICG00000000148 ortholog_one2one 12 retrogenes
retro_mmur_1036, retro_mmur_1165, retro_mmur_1181, retro_mmur_274, retro_mmur_326, retro_mmur_456, retro_mmur_504, retro_mmur_667, retro_mmur_761, retro_mmur_833, retro_mmur_913, retro_mmur_924,
Myotis lucifugus ENSMLUG00000000878 ortholog_one2one 4 retrogenes
retro_mluc_1724, retro_mluc_1972, retro_mluc_1979, retro_mluc_2086,
Macaca mulatta ENSMMUG00000010491 ortholog_one2many 1 retrogene
retro_mmul_344,
Oryctolagus cuniculus ENSOCUG00000010360 ortholog_one2many 1 retrogene
retro_ocun_127,
Otolemur garnettii ENSOGAG00000034434 ortholog_one2many 24 retrogenes
retro_ogar_1018, retro_ogar_1441, retro_ogar_1512, retro_ogar_1690, retro_ogar_1744, retro_ogar_1899, retro_ogar_191, retro_ogar_1921, retro_ogar_200, retro_ogar_2030, retro_ogar_2129, retro_ogar_2310, retro_ogar_235, retro_ogar_2439, retro_ogar_2636, retro_ogar_2928, retro_ogar_3088, retro_ogar_3350, retro_ogar_3419, retro_ogar_389, retro_ogar_777, retro_ogar_824, retro_ogar_829, retro_ogar_834,
Procavia capensis ENSPCAG00000009541 ortholog_one2one 1 retrogene
retro_pcap_330,
Pongo abelii ENSPPYG00000025876 ortholog_one2many 1 retrogene
retro_pabe_179,
Pan troglodytes ENSPTRG00000012774 ortholog_one2one 17 retrogenes
retro_ptro_1033, retro_ptro_1117, retro_ptro_1152, retro_ptro_1591, retro_ptro_1752, retro_ptro_1907, retro_ptro_1908, retro_ptro_2343, retro_ptro_2406, retro_ptro_2485, retro_ptro_2847, retro_ptro_287, retro_ptro_374, retro_ptro_667, retro_ptro_726, retro_ptro_786, retro_ptro_926,
Rattus norvegicus ENSRNOG00000014868 ortholog_one2many 6 retrogenes
retro_rnor_1094, retro_rnor_1320, retro_rnor_1334, retro_rnor_2245, retro_rnor_2296, retro_rnor_984,
Sus scrofa ENSSSCG00000016078 ortholog_one2one 7 retrogenes
retro_sscr_103, retro_sscr_1059, retro_sscr_106, retro_sscr_1088, retro_sscr_294, retro_sscr_298, retro_sscr_401,
Vicugna pacos ENSVPAG00000005805 ortholog_one2one 8 retrogenes
retro_vpac_173, retro_vpac_209, retro_vpac_292, retro_vpac_299, retro_vpac_329, retro_vpac_410, retro_vpac_443, retro_vpac_46,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_418 91.09 100.00
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2. retro_dnov_481 70.87 100.00
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3. retro_dnov_483 91.00 98.02
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4. retro_dnov_490 85.92 70.30
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5. retro_dnov_524 80.36 55.45
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6. retro_dnov_554 83.33 100.00
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7. retro_dnov_966 76.25 79.21
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8. retro_dnov_1088 96.04 100.00
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9. retro_dnov_1117 80.81 98.02
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10. retro_dnov_1214 80.72 82.18
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11. retro_dnov_1375 75.76 96.04
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12. retro_dnov_1391 88.24 98.02
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13. retro_dnov_1405 91.18 100.00
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14. retro_dnov_1412 90.10 100.00
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15. retro_dnov_1428 76.70 100.00
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16. retro_dnov_1445 92.68 81.19
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17. retro_dnov_1546 68.83 76.24
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18. retro_dnov_1647 92.16 100.00
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19. retro_dnov_1652 67.31 100.00
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20. retro_dnov_1686 90.10 100.00
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21. retro_dnov_1821 78.22 97.03
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22. retro_dnov_2176 90.20 100.00
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23. retro_dnov_2291 78.43 100.00
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24. retro_dnov_2413 75.00 100.00
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25. retro_dnov_2569 81.82 63.37
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26. retro_dnov_2625 72.73 98.02
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27. retro_dnov_2652 79.21 100.00
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Download FASTA sequences of all ENSDNOG00000013246 retrocopies