RetrogeneDB ID: | retro_dnov_1686 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_26673:34802..35105(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HSPE1 | ||
Ensembl ID: | ENSDNOG00000013246 | ||
Aliases: | None | ||
Description: | heat shock 10kDa protein 1 (chaperonin 10) [Source:HGNC Symbol;Acc:5269] |
Percent Identity: | 90.1 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | AEQAFRKFMPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKSGDIQPVSVKVGDKV |
A.QAFRKFMPLFD.VLVERS.AETVTKGGIMLPEKSQGK.L.ATVVAVGSG.KGK.GDIQPVSV.VGDKV | |
Retrocopy | AGQAFRKFMPLFDPVLVERSTAETVTKGGIMLPEKSQGKIL*ATVVAVGSGPKGKGGDIQPVSVQVGDKV |
Parental | LLPEYGGTKVVLDDKDYFLFRDGDILGKYID |
LL.EYGGTKVVLDDKDYFLFRDGDIL.KYID | |
Retrocopy | LLSEYGGTKVVLDDKDYFLFRDGDILWKYID |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 4 .67 RPM | 58 .34 RPM |
SRP012922_cerebellum | 1 .79 RPM | 20 .90 RPM |
SRP012922_heart | 3 .71 RPM | 31 .56 RPM |
SRP012922_kidney | 8 .21 RPM | 108 .70 RPM |
SRP012922_liver | 8 .20 RPM | 78 .02 RPM |
SRP012922_lung | 1 .99 RPM | 35 .43 RPM |
SRP012922_quadricep_muscle | 2 .77 RPM | 30 .46 RPM |
SRP012922_spleen | 3 .32 RPM | 62 .84 RPM |