Parental gene:

Tpm1, ENSRNOG00000018184

Aliases:Tpm1, Alpha-tm, Tma2, Tmsa
Description:Tropomyosin alpha-1 chain [Source:UniProtKB/Swiss-Prot;Acc:P04692]
Organism:Rat (Rattus norvegicus)
Coordinates:8:77147582..77174392(-)


>ENSRNOG00000018184
ATGGACGCCATCAAGAAGAAGATGCAGATGCTGAAGCTCGACAAAGAGAACGCCTTGGATCGAGCAGAGCAGGCGGAGGC
TGACAAGAAGGCTGCGGAAGACCGGAGCAAGCAGCTGGAAGATGAGCTGGTGTCACTGCAAAAGAAACTCAAGGGCACTG
AAGATGAACTGGACAAATACTCCGAGGCTCTCAAAGATGCCCAGGAGAAACTGGAGCTGGCGGAGAAAAAGGCCACAGAT
GCTGAAGCTGACGTAGCATCTCTGAACAGACGCATCCAGCTGGTTGAGGAGGAGTTGGATCGCGCTCAGGAGCGTCTGGC
CACAGCTCTACAGAAGCTGGAGGAGGCTGAGAAGGCTGCAGATGAGAGTGAGAGAGGCATGAAAGTCATTGAAAGCCGAG
CCCAAAAAGATGAAGAAAAGATGGAGATTCAGGAGATCCAGCTGAAAGAGGCCAAGCACATTGCTGAAGATGCTGACCGA
AAGTATGAAGAGGTGGCCCGTAAGCTGGTCATCATCGAGAGCGATCTGGAGCGTGCGGAGGAGAGGGCTGAGCTCTCGGA
AGGCAAATGTGCCGAGCTTGAAGAAGAGTTGAAAACGGTGACGAACAACTTGAAGTCACTGGAGGCTCAGGCTGAGAAGT
ACTCTCAGAAAGAAGACAAGTATGAAGAGGAGATCAAGGTTCTCTCTGACAAGCTGAAGGAGGCTGAGACCCGGGCTGAG
TTTGCAGAGAGATCAGTAACCAAATTGGAGAAAAGCATTGATGACTTAGAAGATAAGTTTCTTTGCTTCTCTCCTCCCAA
GACTCCTTCATCAAGCCGGATGTCCCACCTCTCTGAGCTCTGCATCTGTCTGCTCTCCAGCTGA

Library Parental gene expression (RPM)
SRP017611_brain 110 .07 RPM
SRP017611_kidney 99 .86 RPM
SRP017611_liver 43 .50 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000016966 ortholog_one2one 1 retrogene
retro_cfam_2167,
Choloepus hoffmanni ENSCHOG00000012788 ortholog_one2one 11 retrogenes
retro_chof_1194, retro_chof_1272, retro_chof_1360, retro_chof_1789, retro_chof_1829, retro_chof_2309, retro_chof_346, retro_chof_399, retro_chof_412, retro_chof_770, retro_chof_967,
Macropus eugenii ENSMEUG00000014581 ortholog_one2one 2 retrogenes
retro_meug_1944, retro_meug_2161,
Rattus norvegicus ENSRNOG00000016731 within_species_paralog 1 retrogene
retro_rnor_1520,
Rattus norvegicus ENSRNOG00000017441 within_species_paralog 1 retrogene
retro_rnor_1524,
Ictidomys tridecemlineatus ENSSTOG00000009955 possible_ortholog 1 retrogene
retro_itri_166,
Tursiops truncatus ENSTTRG00000003762 ortholog_one2one 1 retrogene
retro_ttru_446,
Vicugna pacos ENSVPAG00000003277 ortholog_one2one 1 retrogene
retro_vpac_424,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_734 61.05 59.23
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Download FASTA sequences of all ENSRNOG00000018184 retrocopies