Parental gene:

Ap3s2, ENSRNOG00000043141

Aliases:None
Description:AP-3 complex subunit sigma-2 [Source:RefSeq peptide;Acc:NP_001108511]
Organism:Rat (Rattus norvegicus)
Coordinates:1:142574434..142615225(-)


>ENSRNOG00000043141
CCAGAAGAAATTCAACAGCAGATTGTTCGAGAGACCTTCCACCTGGTCCTCAAGCGAGATGACAACATCTGTAACTTCTT
AGAAGGTGGAAGTTTGATTGGTGGCTCTGACTACAAACTGATTTACCGGCACTATGCTACCCTCTACTTCGTGTTTTGTG
TGGATTCATCAGAGAGTGAACTTGGGATCTTGGACCTCATCCAGGTTTTTGTGGAGACTCTGGATAAGTGTTTTGAAAAT
GTCTGTGAGTTGGACTTGATCTTCCATATGGATAAGGTGCACTACATCCTCCAGGAGGTGGTGATGGGTGGGATGGTGTT
GGAAACAAACATGAATGAGATCGTGGCTCAAATTGAAGCTCAAAACAGGCTGGAGAAGTCGGAGGGTGGCCTTTCAGCAG
CCCCTGCAAGGGCCGTGTCCGCTGTGAAGAACATCAACCTTCCCGAGATCCCCAGGAACATCAACATCGGCGATCTCAAC
ATCAAAGTTCCCAACCTGTCTCAGTTTGTGTGA

Library Parental gene expression (RPM)
SRP017611_brain 26 .53 RPM
SRP017611_kidney 33 .98 RPM
SRP017611_liver 15 .94 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000001407 ortholog_one2one 1 retrogene
retro_btau_436,
Choloepus hoffmanni ENSCHOG00000003359 ortholog_one2one 4 retrogenes
retro_chof_1775, retro_chof_194, retro_chof_434, retro_chof_88,
Dipodomys ordii ENSDORG00000004247 ortholog_one2one 1 retrogene
retro_dord_115,
Equus caballus ENSECAG00000024044 ortholog_one2one 1 retrogene
retro_ecab_549,
Felis catus ENSFCAG00000028122 ortholog_one2one 1 retrogene
retro_fcat_311,
Macropus eugenii ENSMEUG00000003421 ortholog_one2one 1 retrogene
retro_meug_2032,
Monodelphis domestica ENSMODG00000019522 ortholog_one2one 1 retrogene
retro_mdom_316,
Nomascus leucogenys ENSNLEG00000011780 ortholog_one2one 2 retrogenes
retro_nleu_1380, retro_nleu_1555,
Otolemur garnettii ENSOGAG00000030982 ortholog_one2one 1 retrogene
retro_ogar_1737,
Rattus norvegicus ENSRNOG00000003829 within_species_paralog 1 retrogene
retro_rnor_1460,
Sus scrofa ENSSSCG00000030174 ortholog_one2one 7 retrogenes
retro_sscr_1109, retro_sscr_199, retro_sscr_268, retro_sscr_339, retro_sscr_620, retro_sscr_721, retro_sscr_753,
Tursiops truncatus ENSTTRG00000015554 ortholog_one2one 2 retrogenes
retro_ttru_1233, retro_ttru_1361,
Vicugna pacos ENSVPAG00000008668 ortholog_one2one 1 retrogene
retro_vpac_54,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_931 75.68 64.12
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Download FASTA sequences of all ENSRNOG00000043141 retrocopies