Parental gene:

RPL24, ENSSSCG00000011952

Aliases:None
Description:ribosomal protein L24 [Source:HGNC Symbol;Acc:10325]
Organism:Pig (Sus scrofa)
Coordinates:13:166892682..166899134(+)


>ENSSSCG00000011952
TACAGGGTCGAGCTGTGCAGTTTCAGCGGGTACAAGATCTACCCAGGACACGGGAGGCGCTACGCCAGGACCGACGGGAA
GGTTTTCCAATTTCTTAATGCAAAATGTGAGTCCGCGTTCCTTTCCAAGAGGAATCCTCGGCAGATCAACTGGACTGTTC
TCTACAGAAGGAAGCACAAAAAGGGACAGTCGGAAGAGATTCAGAAGAAAAGAACCCGTCGTGCAGTCAAATTCCAGAGG
GCCATAACTGGTGCATCCCTTGCTGACATAATGGCCAAGAGGAATCAGAAACCTGAAGTTAGGAAGGCTCAAAGAGAACA
AGCTATCAGGGCTGCCAAGGAAGCAAAAAAAGCTAAGCAAGCATCTAAAAAGACAGCAATGGCTGCTGCAAAGGCTCCCA
CAAAGGCAGCACCTAAGCAAAAGATTGTGAAGCCTGTGAAGGTTTCTGCTCCCCGAGTTGGTGGAAAACGCTAA

Library Parental gene expression (RPM)
SRP014902_placenta 116 .94 RPM
SRP014902_testis 261 .53 RPM
SRP018288_heart 378 .03 RPM
SRP018288_kidney 259 .66 RPM
SRP018288_liver 253 .14 RPM
SRP018288_lung 125 .86 RPM
SRP018856_adipose 641 .12 RPM
SRP035408_brain 778 .39 RPM
SRP035408_liver 645 .83 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000003740 ortholog_one2one 3 retrogenes
retro_amel_1042, retro_amel_1089, retro_amel_201,
Canis familiaris ENSCAFG00000009601 ortholog_one2one 4 retrogenes
retro_cfam_1908, retro_cfam_615, retro_cfam_862, retro_cfam_989,
Callithrix jacchus ENSCJAG00000000496 ortholog_one2one 3 retrogenes
retro_cjac_2544, retro_cjac_2941, retro_cjac_327,
Cavia porcellus ENSCPOG00000019941 ortholog_one2one 5 retrogenes
retro_cpor_1020, retro_cpor_461, retro_cpor_474, retro_cpor_904, retro_cpor_947,
Dasypus novemcinctus ENSDNOG00000003194 ortholog_one2one 9 retrogenes
retro_dnov_1209, retro_dnov_1259, retro_dnov_1449, retro_dnov_1643, retro_dnov_2191, retro_dnov_2407, retro_dnov_2537, retro_dnov_523, retro_dnov_657,
Equus caballus ENSECAG00000024095 ortholog_one2one 1 retrogene
retro_ecab_205,
Felis catus ENSFCAG00000003327 ortholog_one2one 1 retrogene
retro_fcat_31,
Loxodonta africana ENSLAFG00000013804 ortholog_one2one 3 retrogenes
retro_lafr_181, retro_lafr_452, retro_lafr_612,
Macropus eugenii ENSMEUG00000009177 ortholog_one2one 7 retrogenes
retro_meug_1769, retro_meug_371, retro_meug_385, retro_meug_449, retro_meug_730, retro_meug_759, retro_meug_963,
Myotis lucifugus ENSMLUG00000017005 ortholog_one2one 4 retrogenes
retro_mluc_1990, retro_mluc_2185, retro_mluc_35, retro_mluc_393,
Macaca mulatta ENSMMUG00000015059 ortholog_one2one 9 retrogenes
retro_mmul_1234, retro_mmul_1711, retro_mmul_1803, retro_mmul_2263, retro_mmul_2521, retro_mmul_37, retro_mmul_560, retro_mmul_609, retro_mmul_823,
Monodelphis domestica ENSMODG00000001916 ortholog_one2one 3 retrogenes
retro_mdom_675, retro_mdom_854, retro_mdom_974,
Mustela putorius furo ENSMPUG00000011738 ortholog_one2one 3 retrogenes
retro_mputfur_255, retro_mputfur_406, retro_mputfur_914,
Oryctolagus cuniculus ENSOCUG00000000791 possible_ortholog 8 retrogenes
retro_ocun_1401, retro_ocun_190, retro_ocun_303, retro_ocun_323, retro_ocun_420, retro_ocun_480, retro_ocun_526, retro_ocun_531,
Otolemur garnettii ENSOGAG00000013843 ortholog_one2one 8 retrogenes
retro_ogar_1592, retro_ogar_1777, retro_ogar_2086, retro_ogar_2785, retro_ogar_2922, retro_ogar_3356, retro_ogar_677, retro_ogar_838,
Pan troglodytes ENSPTRG00000015176 possible_ortholog 2 retrogenes
retro_ptro_1214, retro_ptro_85,
Rattus norvegicus ENSRNOG00000001611 possible_ortholog 25 retrogenes
retro_rnor_1244, retro_rnor_1245, retro_rnor_1247, retro_rnor_1248, retro_rnor_1250, retro_rnor_1251, retro_rnor_1252, retro_rnor_1253, retro_rnor_1452, retro_rnor_1643, retro_rnor_1699, retro_rnor_1850, retro_rnor_1851, retro_rnor_1985, retro_rnor_2026, retro_rnor_2134, retro_rnor_2148, retro_rnor_2205, retro_rnor_2214, retro_rnor_2294, retro_rnor_2709, retro_rnor_435, retro_rnor_751, retro_rnor_964, retro_rnor_993,
Sarcophilus harrisii ENSSHAG00000008226 ortholog_one2one 2 retrogenes
retro_shar_171, retro_shar_264,
Ictidomys tridecemlineatus ENSSTOG00000014654 ortholog_one2one 2 retrogenes
retro_itri_442, retro_itri_69,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_116 75.80 98.73
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2. retro_sscr_669 76.00 63.06
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3. retro_sscr_932 62.92 56.05
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4. retro_sscr_1218 68.70 71.97
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Download FASTA sequences of all ENSSSCG00000011952 retrocopies