RetrogeneDB ID: | retro_rnor_2205 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 5:31680634..31680993(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl24 | ||
Ensembl ID: | ENSRNOG00000001611 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L24 [Source:UniProtKB/Swiss-Prot;Acc:P83732] |
Percent Identity: | 57.02 % |
Parental protein coverage: | 75.8 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | SAFLSKRNPRQINWTVLYRRKHK-KGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQRE |
S.FL.K.N..Q.NWT.LYR.K...K...EE...KRT..AV.FQRAIT.ASL......R.QK...RK.Q.. | |
Retrocopy | SSFLAKGNSPQMNWTTLYREKTQYKNCWEENPRKRTGNAVNFQRAITCASLPNTTT*RTQKLQLRKTQ*K |
Parental | QAIRAAKEAKKAKQASKKTAMAAAKAP-TKAAPKQKIVKPVKVSAPRVGGK |
QA....KEAKKA.QAS.K.AMA.AKAP.TK..P..KI.K..KVSAP.V.GK | |
Retrocopy | QATGVTKEAKKANQASEKAAMAVAKAP<TKIVPQHKIFKLGKVSAPQVSGK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 63 .99 RPM |
SRP017611_kidney | 0 .00 RPM | 73 .97 RPM |
SRP017611_liver | 0 .00 RPM | 62 .33 RPM |
Species | RetrogeneDB ID |
---|---|
Mus musculus | retro_mmus_2434 |