RetrogeneDB ID: | retro_rnor_2294 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 6:62597126..62597543(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl24 | ||
Ensembl ID: | ENSRNOG00000001611 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L24 [Source:UniProtKB/Swiss-Prot;Acc:P83732] |
Percent Identity: | 78.32 % |
Parental protein coverage: | 89.17 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | HGRRYARTDGKVFQFLNAKCES-AFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVKFQRAITGA |
HG.RY.RTDGKVFQF..A..ES..FLSKRNPR.I.WTVLY.RKH.KGQSEEIQKKRTRRAV..QRAITGA | |
Retrocopy | HGQRYTRTDGKVFQFFKARRES<IFLSKRNPR*ITWTVLYKRKHRKGQSEEIQKKRTRRAVTAQRAITGA |
Parental | SLADIMAKRNQKPEVRKAQREQAI-RAAKEAKKAKQASKKTAMAAAKAPTKAAPK-QKIVKPVKVSAPRV |
SLADIMAKR.QKP.VRKA..EQ.I...AKE..KAKQASKKTAMA.AK.PTKAAPK...IV.PVKVSAP.V | |
Retrocopy | SLADIMAKRTQKPGVRKAH*EQGI<KRAKETRKAKQASKKTAMAVAKGPTKAAPK<TMIVTPVKVSAPTV |
Parental | GGK |
GGK | |
Retrocopy | GGK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 63 .99 RPM |
SRP017611_kidney | 0 .00 RPM | 73 .97 RPM |
SRP017611_liver | 0 .00 RPM | 62 .33 RPM |