RetrogeneDB ID: | retro_dnov_1209 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_163519:3788..4098(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL24 | ||
Ensembl ID: | ENSDNOG00000003194 | ||
Aliases: | None | ||
Description: | ribosomal protein L24 [Source:HGNC Symbol;Acc:10325] |
Percent Identity: | 63.21 % |
Parental protein coverage: | 59.54 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 3 |
Parental | LYRRKHKKGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEA-KKAKQAS |
L.R.KHKK.Q...IQ.K.T.R..KFQRAI..A.LAD..AK.NQK.EVRK.Q.EQAIRAA.EA.KKAKQ.S | |
Retrocopy | LDRKKHKK*QLGGIQMKTTHREIKFQRAIINAPLADTIAKGNQKSEVRKTQ*EQAIRAAREA>KKAKQTS |
Parental | KKT-AMAAAKAPTKAAP-KQKIVKSVKVSAPRVGGK |
KKT..M..AKAPTKA.....K..K.VKVS...V.GK | |
Retrocopy | KKT<IMTSAKAPTKAVH>Q*KMKKTVKVSTT*VSGK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 258 .45 RPM |
SRP012922_cerebellum | 0 .00 RPM | 152 .73 RPM |
SRP012922_heart | 0 .00 RPM | 196 .76 RPM |
SRP012922_kidney | 0 .00 RPM | 368 .80 RPM |
SRP012922_liver | 0 .00 RPM | 167 .66 RPM |
SRP012922_lung | 0 .00 RPM | 355 .85 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 265 .51 RPM |
SRP012922_spleen | 0 .00 RPM | 383 .67 RPM |