Parental gene:

RNF128, ENSSSCG00000012551

Aliases:None
Description:ring finger protein 128, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:21153]
Organism:Pig (Sus scrofa)
Coordinates:X:101558756..101619401(+)


>ENSSSCG00000012551
ATGGGGCCGCCGCCCGGGGCCGGGGTCTCCTGCTGCGGTGGCTGCGGCTTTTCCCGATTGCTGGCCTGGTGCTTCCTGCT
GGCGCTGAGCCCGCAAGCCCCCGGCTCCCGGGGAGCCGAAGCAGTGTGGACCGCGTACCTCAACGTGTCCTGGCGGGTTC
CGCACACCGGAGTGAACCGCACCGTGTGGGAGCTGAGCGAAGAGGGCGTGTACGGCCAGGATTCCCCACTCGAGCCGGTG
GCTGGGGTCCTGGTCCCGCCCGACGGGCCGGGGGCGCTCAACGCCTGTAACCCGCACACGAATTTCACGGTGCCCACGGT
GCCTGGGGACTGGGGCCACAACGTGCAAGTCTCTTGGCTGGCCCTCATCCAGCGCGGCGGGGGCTGCACCTTCGCAGACA
AGATCCATCTGGCTTACGAGAGAGGGGCGTCCGGAGCCGTCATCTTTAACTTCCCGGGGACCCGCAATGAGGTCATCCCC
ATGTCTCACCCGGGTGCAGGAGATATTGTTGCAATCATGATTGGCAATCTCAAAGGCACAAAAATTCTACAATCTATTCA
AAGAGGAATACAAGTGACAATGGTCATTGAAGTAGGGAAAAAACATGGCCCTTGGGTGAATCACTATTCCATTTTCTTCG
TTTCTGTGTCCTTTTTTATTATCACGGCAGCAACTGTGGGCTATTTTATTTTTTATTCTGCTCGGAGATTACGGAATGCA
AGAGCTCAAAGCAGGAAGCAGAGACAATTAAAGGCAGATGCTAAAAAAGCTATTGGAAGGCTTCAACTCCGTACACTGAA
ACAAGGAGACAAGGAAATTGGCCCTGATGGAGATAGTTGTGCTGTGTGTATTGAGCTGTATAAACCAAATGATTTGGTGC
GCATCTTAACCTGCAACCATATTTTCCATAAGACATGTGTTGACCCATGGCTGTTGGAACATAGGACTTGCCCCATGTGC
AAATGTGACATACTCAAAGCTTTGGGAATTGAGGTGGATGTTGAAGATGGATCAGTGTCTTTACAAGTTCCTGTATCCAA
TGAAACATCCAATAGTGCCTCTCCTCATGAAGAGGATAATCGCAGTGAGACTGCATCGTCTGGATATGCATCAGTTCAGG
GAGCCGATGAACCGCCTTTGGAGGAACACGTGCAGTCAGCAAATGAAAATCTACAGCTGGTAAACCATGAAGCAAGTTCC
ATGGCAGTGGATGTTGTTCCTCACGTTGACAACCCCACGTTTGAAGAAGATGAAACTCCTGGTCAAGAGACTGCTGTTCG
AGAAATTAAATCATAA

Library Parental gene expression (RPM)
SRP014902_placenta 5 .44 RPM
SRP014902_testis 25 .88 RPM
SRP018288_heart 53 .93 RPM
SRP018288_kidney 257 .40 RPM
SRP018288_liver 85 .71 RPM
SRP018288_lung 14 .66 RPM
SRP018856_adipose 0 .28 RPM
SRP035408_brain 76 .48 RPM
SRP035408_liver 468 .81 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000022920 ortholog_one2one 1 retrogene
retro_btau_1358,
Loxodonta africana ENSLAFG00000002816 ortholog_one2one 1 retrogene
retro_lafr_946,
Macropus eugenii ENSMEUG00000001567 ortholog_one2one 1 retrogene
retro_meug_1139,
Mustela putorius furo ENSMPUG00000003695 ortholog_one2one 1 retrogene
retro_mputfur_340,
Oryctolagus cuniculus ENSOCUG00000012328 ortholog_one2one 1 retrogene
retro_ocun_37,
Pelodiscus sinensis ENSPSIG00000010727 possible_ortholog 1 retrogene
retro_psin_49,
Pan troglodytes ENSPTRG00000022151 ortholog_one2one 1 retrogene
retro_ptro_2651,
Sus scrofa ENSSSCG00000014013 within_species_paralog 3 retrogenes
retro_sscr_150, retro_sscr_253, retro_sscr_254,
Sus scrofa ENSSSCG00000017906 other_paralog 1 retrogene
retro_sscr_518,
Ictidomys tridecemlineatus ENSSTOG00000022922 ortholog_one2one 2 retrogenes
retro_itri_1254, retro_itri_1255,
Tursiops truncatus ENSTTRG00000007536 ortholog_one2one 1 retrogene
retro_ttru_6,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_597 58.57 58.24
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Download FASTA sequences of all ENSSSCG00000012551 retrocopies