RetrogeneDB ID: | retro_sscr_597 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 18:26128659..26129394(+) | ||
Located in intron of: | ENSSSCG00000016611 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RNF128 | ||
Ensembl ID: | ENSSSCG00000012551 | ||
Aliases: | None | ||
Description: | ring finger protein 128, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:21153] |
Percent Identity: | 58.57 % |
Parental protein coverage: | 58.24 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | SWLALIQRGGGCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHPGAGDIVAIMIGNLKGTKILQSIQ |
.WLAL..RGG.CTF..KI..A.E.GASG..I.NFPGT.N.V.PMSH....DIV..MIGNLKG..IL..I. | |
Retrocopy | TWLALVERGG-CTFTQKIKVAVEKGASGVIIYNFPGTGNQVFPMSHQTFEDIVVVMIGNLKGMEILHLIR |
Parental | RGIQVTMVIEVGKKHGPWVNHYSIFFVSVSFFIITAATVGYFIFYSARRLRNARAQSRKQRQLKADAKKA |
.G..VT..IEVG.KH..W.NHY...FV.V.....TA...........RRL..AR.QSR....L..D.KKA | |
Retrocopy | KGVHVTVMIEVGRKHIIWMNHYFVSFVIVT----TATLAYFIFYH-IRRLWVARIQSRRWQRLTTDLKKA |
Parental | IGRLQLRTLKQGDKEIGPDGDSCAVCIELYKPNDLVRILTCNHIFHKTCVDPWLLEHRTCPMCKCDILKA |
.G.LQLR.LK.GD.E.GP.GDSC.VC.ELYKPND.VRILTC.H.FHK.C.DPW.L.H.TCPMCKCDILKA | |
Retrocopy | FGQLQLRVLKEGDDEVGPNGDSCVVCFELYKPNDTVRILTCKHFFHKNCIDPWVLAHGTCPMCKCDILKA |
Parental | LGIEVDVEDGSVSLQVPVSNETSNSASPHEEDNRSETASSG |
LGI.VDVEDG..SLQ...S.E.....SP.EE....E....G | |
Retrocopy | LGIQVDVEDGTESLQILMSSELPGLLSPSEEGPGNEPPPAG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 5 .44 RPM |
SRP014902_testis | 0 .00 RPM | 25 .88 RPM |
SRP018288_heart | 0 .00 RPM | 53 .93 RPM |
SRP018288_kidney | 0 .10 RPM | 257 .40 RPM |
SRP018288_liver | 0 .00 RPM | 85 .71 RPM |
SRP018288_lung | 0 .10 RPM | 14 .66 RPM |
SRP018856_adipose | 0 .00 RPM | 0 .28 RPM |
SRP035408_brain | 0 .00 RPM | 76 .48 RPM |
SRP035408_liver | 0 .06 RPM | 468 .81 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2651 |
Oryctolagus cuniculus | retro_ocun_37 |
Bos taurus | retro_btau_1358 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000022920 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000002816 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000001567 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000003695 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000012328 | 1 retrocopy | |
Pelodiscus sinensis | ENSPSIG00000010727 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000022151 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000012551 | 1 retrocopy |
retro_sscr_597 ,
|
Sus scrofa | ENSSSCG00000014013 | 3 retrocopies | |
Sus scrofa | ENSSSCG00000017906 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000022922 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000007536 | 1 retrocopy |