RetrogeneDB ID: | retro_amel_114 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192410.1:1338340..1338961(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSAMEG00000019881 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RDH13 | ||
Ensembl ID: | ENSAMEG00000003306 | ||
Aliases: | None | ||
Description: | retinol dehydrogenase 13 (all-trans/9-cis) [Source:HGNC Symbol;Acc:19978] |
Percent Identity: | 54.59 % |
Parental protein coverage: | 61.98 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | EEEGQVHILVNNAAVMRCPHWTTEDGFEMQFGVNHLGHFLLTNLLLDTLKASAPSRIINLSSLAHVAGHI |
.EE.....L.NNA....CP...TEDGFEMQFGVNHLGHFLLTNLLL..LK.SAPSRI...SS.....G.I | |
Retrocopy | KEEPRLDVLINNAGIFQCPYMKTEDGFEMQFGVNHLGHFLLTNLLLGLLKSSAPSRIVVVSSKLYKYGDI |
Parental | DFDDLNWEKRKYDTKAAYCQSKLAVILFTKELSRRLQGTGVTVNALHPGVARTELGRHTGMHSSAFSSFT |
.F.DLN.E...Y.....Y..SKLA.ILFT.EL.RRL.GT.VTVN.LHPG..RT.LGRH..M.......F. | |
Retrocopy | NFEDLNSE-QSYNKSFCYSRSKLANILFTRELARRLEGTNVTVNVLHPGIVRTNLGRHIHMPLLVKPLFN |
Parental | LGPIFWLLVKSPELAAQPSTYLAVAEELGGVSGKYFDGLKEKPPAPEAEDEEVAQRLWAESARLVGL |
L....W...K.P...AQ.S.YLA...E..GVSGKYF...KE....P.A.DE.VA..LW..S...VG. | |
Retrocopy | L--VSWAFFKTPLEGAQTSVYLASSPEVDGVSGKYFGDCKEEELLPKAMDESVARKLWDISEVMVGI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000003306 | 1 retrocopy |
retro_amel_114 ,
|
Ailuropoda melanoleuca | ENSAMEG00000008036 | 1 retrocopy | |
Equus caballus | ENSECAG00000023146 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000015998 | 2 retrocopies | |
Petromyzon marinus | ENSPMAG00000009095 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000010398 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000011484 | 1 retrocopy | |
Sorex araneus | ENSSARG00000003600 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000016531 | 1 retrocopy | |
Drosophila melanogaster | FBgn0033203 | 1 retrocopy |