RetrogeneDB ID: | retro_amel_673 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192563.1:1282072..1282660(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RDH12 | ||
Ensembl ID: | ENSAMEG00000008036 | ||
Aliases: | None | ||
Description: | retinol dehydrogenase 12 (all-trans/9-cis/11-cis) [Source:HGNC Symbol;Acc:19977] |
Percent Identity: | 70.15 % |
Parental protein coverage: | 61.88 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | LHILINNAGVMMCPYSKTADGFESHLGVNHLGHFLLTHLLLERLKESTPAR-VVNLSSVVHHAGKIHFHD |
LHILINNA.VMM.PYSK.A..FE.HLGVNHL.HFL.THLLL..LK...P.R.V.NLSSV.HHA.K.HFH. | |
Retrocopy | LHILINNAEVMMYPYSKKAGDFETHLGVNHLSHFLCTHLLLVPLKK-CPHR<VMNLSSVTHHASKSHFHN |
Parental | LQSEKYYSRSLAYCHSKLANV-LFTRELAKRLQGTGVTTYAVHPGIVSSELVRHSFLLCLLWRIFSPFIK |
LQ.EK.YSR..A.CHSK.ANV..F..ELAKRLQGTGVTTYAVHPGI..S.LV.HSFLLCLLW..FSPFIK | |
Retrocopy | LQGEKQYSRGFAHCHSKVANV<IFNWELAKRLQGTGVTTYAVHPGIICSQLVWHSFLLCLLWGFFSPFIK |
Parental | SAWEGAQTSLHCALAEGLEPLSGKYFSDCKKAWVSPKSRDNKTAERLWNVS-CELLGIQWQ |
S...GA.T.LHCALAE.LEPL.GK.F.DCK..WVS......KT.E.LWNV...ELL.IQW. | |
Retrocopy | STR*GAWTRLHCALAESLEPLCGKNFGDCKRTWVSSSV*NSKTIECLWNVA<WELLKIQWE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000003306 | 1 retrocopy | |
Ailuropoda melanoleuca | ENSAMEG00000008036 | 1 retrocopy |
retro_amel_673 ,
|
Canis familiaris | ENSCAFG00000016446 | 1 retrocopy | |
Felis catus | ENSFCAG00000014092 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000022637 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000001473 | 1 retrocopy | |
Meleagris gallopavo | ENSMGAG00000011960 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000010855 | 1 retrocopy | |
Ornithorhynchus anatinus | ENSOANG00000015759 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000009359 | 1 retrocopy | |
Pelodiscus sinensis | ENSPSIG00000010721 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000012445 | 1 retrocopy | |
Drosophila melanogaster | FBgn0033203 | 1 retrocopy |