RetrogeneDB ID: | retro_amel_16 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192597.1:219856..221188(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSAMEG00000018816 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BECN1 | ||
Ensembl ID: | ENSAMEG00000006867 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 56.32 % |
Parental protein coverage: | 61.83 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | QMSEDDSEQLQLELKELVLEEGRLIQELEDVEKNRKIVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQ |
...E.....LQ.EL..L.LEE..L.QEL..VEKNR...A..LE...AE...LDQ...QY.R.YS....QQ | |
Retrocopy | RIREEEKKTLQGELEGLELEEATLMQELKEVEKNRERIAADLEAARAETKALDQQNEQYWRDYSNLQWQQ |
Parental | LELDDELKSVENQMRYAQMQLDKLKKTNVFNATFHIWHSGQFGTINNFRLGRLPSVPVEWNEINAAWGQT |
LEL.D.L.S...Q.RYAQ.Q...L.KTNVFNATF.I.H.G..G.IN.FRLG.LP..PV.W.EIN.AWGQT | |
Retrocopy | LELQDQLRSIKHQLRYAQIQWGRLTKTNVFNATFEIRHDGPVGIINSFRLGCLPTIPVSWKEINMAWGQT |
Parental | VLLLHALANKMGLKFQRYRLVPYGNHSYLESLTDKSKELPLYCSGGLRFFWDNKFDHAMVAFLDCVQQFK |
.LLL.AL.NK.GL.FQRYRLVP.G..S.L.S.T....ELPL....G.R.....KFD.AM.AFLDC.QQFK | |
Retrocopy | ALLLLALSNKIGLEFQRYRLVPCGERSCLKSVTADPVELPLFYTAGQRTCLHVKFDQAMMAFLDCMQQFK |
Parental | EEVEKGETRFCLPYRMDVEKGKIEDTGGSGGSYSIKTQFNSEEQWTKALKFMLTNLKWGLAWVSSQF |
EE.EKG....CLP.R..VE.G..ED...SG..YSI.T..N.EEQWTKAL..ML.N....L.WVS... | |
Retrocopy | EEAEKGKGGLCLPCRIHVESGVMEDSRSSGEFYSIRTHLNTEEQWTKALRLMLINFRHSLDWVSLRY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006867 | 1 retrocopy |
retro_amel_16 ,
|
Bos taurus | ENSBTAG00000019914 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000000956 | 1 retrocopy | |
Felis catus | ENSFCAG00000013136 | 1 retrocopy | |
Homo sapiens | ENSG00000126581 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000011700 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000029971 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000015064 | 1 retrocopy | |
Mus musculus | ENSMUSG00000035086 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000011840 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000015964 | 3 retrocopies | |
Procavia capensis | ENSPCAG00000014049 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000022819 | 1 retrocopy | |
Sorex araneus | ENSSARG00000000367 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000017386 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000012612 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000011716 | 1 retrocopy |