RetrogeneDB ID: | retro_pcap_345 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | scaffold_44707:15993..16866(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSPCAG00000007411 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BECN1 | ||
Ensembl ID: | ENSPCAG00000014049 | ||
Aliases: | None | ||
Description: | beclin 1, autophagy related [Source:HGNC Symbol;Acc:1034] |
Percent Identity: | 54.92 % |
Parental protein coverage: | 75. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | ESANSFTLIGEASDGGTMENLSRRLKVTGDLFDIMSGQTDVDHPLCEECTDTLLDQLDTQLNVTENECQN |
E....FTL.G.......M..LS.........F.I.SG....DHPLCEECTD.LL..LD.QL..TE.ECQ. | |
Retrocopy | ETSDIFTLLGKVC---SMRTLSSIQETFLEAFNILSGEKEMDHPLCEECTDSLLELLDMQLTRTESECQM |
Parental | YKRCLEILEQMN-EDDSEQLQMELKELALEEERLIQELEDVEKNRKIVAENLEKVQAEAERLDHEEAQYQ |
YK.CLE..E........E.LQ.EL..L.LEE.RL.QEL..VEK..K..A..L...QAEAE.L...E.Q.. | |
Retrocopy | YKLCLETRELTTCQEELEVLQRELESLELEEARLVQELAGVEKVWKQAAGDLQAAQAEAETLEQQEKQSW |
Parental | REYSEFKRQQLELDDELKSVENQMRYAQMQLDKLKKTNVFNATFHIWHSGQFGTINNFRLGRLPSVPVEW |
R.YS....QQLEL.DEL.S.EN....A..QL..L.....F...FHIWH.G..G.INNF.LG.LP.VPV.W | |
Retrocopy | RDYSVLEQQQLELLDELRSLENRLQGARIQLGQLTDASIFRMAFHIWHEGPVGVINNFKLGCLPTVPVSW |
Parental | NEINAAWGQTVLLLHALANKMGLKFQRYRLVPYGNHSYLESLTDKSKELPLYCSGGLRFFWDNKFDHAMV |
.EI.AAWGQT.LLL..L..K.GL.FQRYRLVP.G.HSYL..LTD.S..LPL.C......F.D.KFDHAMV | |
Retrocopy | SEISAAWGQTALLLFVLSKKIGLQFQRYRLVPLGSHSYLKPLTDDSAGLPLFCFQKQTVFLD-KFDHAMV |
Parental | AFLDCVQQFKEEVEK |
AFLDC.QQ.KE.VEK | |
Retrocopy | AFLDCLQQLKEKVEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006867 | 1 retrocopy | |
Bos taurus | ENSBTAG00000019914 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000000956 | 1 retrocopy | |
Felis catus | ENSFCAG00000013136 | 1 retrocopy | |
Homo sapiens | ENSG00000126581 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000011700 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000029971 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000015064 | 1 retrocopy | |
Mus musculus | ENSMUSG00000035086 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000011840 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000015964 | 3 retrocopies | |
Procavia capensis | ENSPCAG00000014049 | 1 retrocopy |
retro_pcap_345 ,
|
Pan troglodytes | ENSPTRG00000022819 | 1 retrocopy | |
Sorex araneus | ENSSARG00000000367 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000017386 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000012612 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000011716 | 1 retrocopy |