RetrogeneDB ID: | retro_itri_25 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393336.1:8533008..8534271(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSTOG00000027748 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BECN1 | ||
Ensembl ID: | ENSSTOG00000012612 | ||
Aliases: | None | ||
Description: | beclin 1, autophagy related [Source:HGNC Symbol;Acc:1034] |
Percent Identity: | 51.75 % |
Parental protein coverage: | 89.29 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | ATAQAKPGDTQEEEANSGEEPFIETRQDGVSRRFIPPARMMSTESANSFTLIGEASDGGTMENLSRRLKV |
...Q..PG..QE..A.S.E.......Q...SR...P....MS..S...F.L.G..........LS...K. | |
Retrocopy | SSGQGEPGEAQEDGARSMEKTDGGEPQVSASRT-LPDDVGMSEQSSSNFILLGKIT---SLRTLSSIQKT |
Parental | TGDLFDIMSGQTDVDHPLCEECTDTLLDQLDTQLNVTENECQNYKCCLEILEQMNEDDSEQLQRELKELA |
T...FDI.SGQ...D.PLCEECTD..L.QLD.Q...TE...Q.Y...LE......ED..E.LQ.EL..L. | |
Retrocopy | TAEMFDILSGQKEMDLPLCEECTDNFLKQLDSQIALTELDEQIYRRYLETKVLKDEDQRETLQMELQALE |
Parental | LEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQ |
LEE..L.QEL.DV..N....A..L...QAE...L...E.Q..R..S..K.QQ.EL.D.L.SVENQ..YA. | |
Retrocopy | LEEAKLAQELKDVDENHARIAADLRAAQAETVELQLQERQHLRDFSHLKWQQQELSDQLTSVENQLWYAS |
Parental | MQLDKLKKTNVFNATFHIWHSGQFGTINNFRLGRLPSVPVEWNEINAAWGQTVLLLHALANKMGLKFQRY |
.QLD.LKKTN.F.ATF.I...G..G.INNFRLGRLPSVPV.WNEINAAWGQ..LLL..L....GL.FQRY | |
Retrocopy | VQLDRLKKTNIFDATFEIREEGTLGIINNFRLGRLPSVPVGWNEINAAWGQAALLLLTLSKAIGLQFQRY |
Parental | RLVPYGNHSYLESLTDKSKELPLYCSGGLRFFWDNKFDHAMVAFLDCVQQFKEEVEKGETRFCLPYRMDV |
.L...GNHSYL.SLT.....LPL...G....FW.N.FD.A..AFLDC.QQF.EE.EK.....CLPYR... | |
Retrocopy | QLMACGNHSYLKSLTGDCADLPLFADGRENVFWNNTFDQAILAFLDCLQQFEEEAEKQAGDLCLPYRILL |
Parental | EKGKIEDTGGSGGSYSIKTQFNSEEQWTKALKFMLTNLKWGLAWVSSQFY |
E.G.IED..GSG..YS..T..N.EEQWTKALK.ML.NLK..L.WVSS... | |
Retrocopy | EEGLIEDPTGSGEWYSVRTHLNTEEQWTKALKLMLLNLKRSLSWVSSRYH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006867 | 1 retrocopy | |
Bos taurus | ENSBTAG00000019914 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000000956 | 1 retrocopy | |
Felis catus | ENSFCAG00000013136 | 1 retrocopy | |
Homo sapiens | ENSG00000126581 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000011700 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000029971 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000015064 | 1 retrocopy | |
Mus musculus | ENSMUSG00000035086 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000011840 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000015964 | 3 retrocopies | |
Procavia capensis | ENSPCAG00000014049 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000022819 | 1 retrocopy | |
Sorex araneus | ENSSARG00000000367 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000017386 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000012612 | 1 retrocopy |
retro_itri_25 ,
|
Tursiops truncatus | ENSTTRG00000011716 | 1 retrocopy |