RetrogeneDB ID: | retro_amel_545 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192494.1:758326..758662(-) | ||
Located in intron of: | ENSAMEG00000003829 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPL20 | ||
Ensembl ID: | ENSAMEG00000013932 | ||
Aliases: | None | ||
Description: | mitochondrial ribosomal protein L20 [Source:HGNC Symbol;Acc:14478] |
Percent Identity: | 84.82 % |
Parental protein coverage: | 75.17 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | CYRLAVRAVTRAFVKCTKARRLKKRNMRTLWINRITAASQEHGLKYPAFIVNLIKCQVELNRKVLADLAI |
CYRL.VRAVTRA.VKCTK..RLKKRNMRTLWIN.IT.ASQEHGLKYPAF.VNL.KCQVELN.KVL.DLAI | |
Retrocopy | CYRLVVRAVTRASVKCTKVQRLKKRNMRTLWINQITGASQEHGLKYPAFTVNLVKCQVELNSKVLVDLAI |
Parental | YEPKTFKSLAALAKRRRQEGFAAALGDGKEPEGIFSRVVQHH |
.EPKTFKSLAALAKRR.QEGFAAALG..KEPE.IFSR.VQ.H | |
Retrocopy | CEPKTFKSLAALAKRR*QEGFAAALGHRKEPESIFSRGVQYH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000013932 | 2 retrocopies |
retro_amel_143, retro_amel_545 ,
|
Canis familiaris | ENSCAFG00000019259 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000010105 | 1 retrocopy | |
Homo sapiens | ENSG00000242485 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000027251 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000011857 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000006562 | 2 retrocopies | |
Mus musculus | ENSMUSG00000029066 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000005968 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000001425 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000008735 | 2 retrocopies |