RetrogeneDB ID: retro_ggor_1565

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: 21:25452938..25453271(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MRPL20
• Ensembl ID: ENSGGOG00000027251
• Aliases: None
• Description: None

Sequence

>retro_ggor_1565
AATTGCTGCTACAGGTTGGCGGTCAGAGCCGGGACTCGAGCCTTTGTGAAATGCACCAAAGCCGGAAACCTGAAGAAGAG
GACCATGAGGACCCTCTGGATTAATCGAATTACAGCTGCTACCCAGGAAAACGGCCCGAAGTACCCAGCGTTCACTGGCA
ATTTAATTAAGTGCCAGGTGGAGCGCCACAAGAAAGTCCCAGCGAATCTGGCTATCTACGAACCAGAGACTTTTAAATCT
TTGGCTGCCTTGGCCAATAGGAGGCGACAGGAAGAATTTGCTGCTGCCTTAGGAGATGGGAAGGCAGCATATTTTTCCAG
AATGGTACAGTAC

Alignment

ORF - retro_ggor_1565 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 63.72 %
• Parental protein coverage: 75.84 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  NRCYRLAVRTVIRAFVKCTKARYLKKKNMRTLWFFRVVTKDPEQGVWFPGPTSGLESCQVELNRKVLADL
          N.CYRLAVR...RAFVKCTKA..LKK..MRTLW..R......E.G...P..T..L..CQVE...KV.A.L
Retrocopy NCCYRLAVRAGTRAFVKCTKAGNLKKRTMRTLWINRITAATQENGPKYPAFTGNLIKCQVERHKKVPANL

Parental  AIYEPKTFKSLAALASRRRHEGFAAALGDGKEPEGIFSRVVQY
          AIYEP.TFKSLAALA.RRR.E.FAAALGDGK.....FSR.VQY
Retrocopy AIYEPETFKSLAALANRRRQEEFAAALGDGK--AAYFSRMVQY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.29 RPM	28.68 RPM
SRP007412_cerebellum	0.32 RPM	22.34 RPM
SRP007412_heart	0.22 RPM	27.45 RPM
SRP007412_kidney	0.37 RPM	37.17 RPM
SRP007412_liver	0.32 RPM	29.97 RPM
SRP007412_testis	0.52 RPM	17.20 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_1565 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_1565 has 1 orthologous retrocopies within eutheria group .

Species	RetrogeneDB ID
Homo sapiens	retro_hsap_2508

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Parental genes homology:

Parental genes homology involve 11 parental genes, and 15 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000013932	2 retrocopies	retro_amel_143, retro_amel_545,
Canis familiaris	ENSCAFG00000019259	2 retrocopies	retro_cfam_2112, retro_cfam_826,
Dasypus novemcinctus	ENSDNOG00000010105	1 retrocopy	retro_dnov_1620,
Homo sapiens	ENSG00000242485	1 retrocopy	retro_hsap_2508,
Gorilla gorilla	ENSGGOG00000027251	1 retrocopy	retro_ggor_1565 ,
Myotis lucifugus	ENSMLUG00000011857	1 retrocopy	retro_mluc_1423,
Monodelphis domestica	ENSMODG00000006562	2 retrocopies	retro_mdom_1424, retro_mdom_719,
Mus musculus	ENSMUSG00000029066	1 retrocopy	retro_mmus_1624,
Otolemur garnettii	ENSOGAG00000005968	1 retrocopy	retro_ogar_2263,
Procavia capensis	ENSPCAG00000001425	1 retrocopy	retro_pcap_238,
Tupaia belangeri	ENSTBEG00000008735	2 retrocopies	retro_tbel_2193, retro_tbel_892,