RetrogeneDB ID: | retro_tbel_892 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_3257:373524..373829(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPL20 | ||
Ensembl ID: | ENSTBEG00000008735 | ||
Aliases: | None | ||
Description: | mitochondrial ribosomal protein L20 [Source:HGNC Symbol;Acc:14478] |
Percent Identity: | 79.61 % |
Parental protein coverage: | 68.46 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | RNRLTDRYWRVQEVLKHARHFRGRKNRCYKLAIRAVTRAYVKCTKARRLKKRNMRTLWIN-RITAASQEH |
.NR.TD.YW.V.E.LK.ARHF.GRKNRCYKLA.RAVT.AY.KCTKARRLKKRNMRTLWIN..ITAASQEH | |
Retrocopy | QNRVTDCYWHVLEGLKRARHFWGRKNRCYKLATRAVTGAYAKCTKARRLKKRNMRTLWIN<SITAASQEH |
Parental | GLKYPAFMANLVKCQVELNRKVLADLAIYEPKT |
GLK.PAF...LVKCQVELNRKVL..LAI..PKT | |
Retrocopy | GLKCPAFVVCLVKCQVELNRKVLTELAICQPKT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000013932 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000019259 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000010105 | 1 retrocopy | |
Homo sapiens | ENSG00000242485 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000027251 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000011857 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000006562 | 2 retrocopies | |
Mus musculus | ENSMUSG00000029066 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000005968 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000001425 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000008735 | 2 retrocopies |
retro_tbel_2193, retro_tbel_892 ,
|