RetrogeneDB ID: | retro_tbel_2193 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_104241:2994..3439(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPL20 | ||
Ensembl ID: | ENSTBEG00000008735 | ||
Aliases: | None | ||
Description: | mitochondrial ribosomal protein L20 [Source:HGNC Symbol;Acc:14478] |
Percent Identity: | 72. % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 1 |
Parental | MVFLTAQLWLRNRLTDRYWRVQEVLKHARHFRGRKNRCYKLAIRAVTRAYVKCTKARRLKKRNMRTLWIN |
MVF..AQLWLRN.LTD.YW.VQ.VL.H..HF.GR...CYKLAIRAVT.AY.KCTKA.R...RNM.TLWIN | |
Retrocopy | MVFFMAQLWLRNHLTDHYWCVQ*VLPHSWHFWGRMIHCYKLAIRAVTKAYLKCTKA*R-*ERNMKTLWIN |
Parental | RITAASQEHGLKYPAFMANLVKCQVELNRKVLADLAI-YEPKTFKSLAALAKRRRQEGFAAALGDGKEPE |
RITA.SQ..GLKYP.F..NLVKCQVE.NRKVLADLAI....K.F.S.AALAK.R.Q.GF.A.LG.GKEP. | |
Retrocopy | RITATSQQNGLKYPPFTVNLVKCQVEFNRKVLADLAI>LWTKEF*SFAALAKKRGQVGFTASLGNGKEPK |
Parental | GIFSRVVQYH |
GIFSRVV.YH | |
Retrocopy | GIFSRVV*YH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000013932 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000019259 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000010105 | 1 retrocopy | |
Homo sapiens | ENSG00000242485 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000027251 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000011857 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000006562 | 2 retrocopies | |
Mus musculus | ENSMUSG00000029066 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000005968 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000001425 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000008735 | 2 retrocopies |
retro_tbel_2193 , retro_tbel_892,
|