RetrogeneDB ID: retro_mluc_1423

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429835:4594120..4594464(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000030704
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: MRPL20
• Ensembl ID: ENSMLUG00000011857
• Aliases: None
• Description: None

Sequence

>retro_mluc_1423
AAGAACTGCTGCTACCGGCTGTCCCTCTGTCTGTGATCAGAGCGTTTGTGAAATGCACGAAAGCCCGGAGACGGAAAAGG
AGGATCCTGAGGACGCTCTTGATTAATCGAATTACAGCTGTCTCGCAGGAACATGGCCTGCATTACCCAGCGTTCATTGG
CAATTTAATTAAGTGCCAGGTGGAGCTCAACAGGAAAGTGCTGGCTGATCTGGCCATCGATGGACCCAAGACTTTTAAAT
CCTTGGCTGCTTTGGCCAGAAGGAGGCGAGAGGGAGGATTTGCTGCTGTCTTGGAGGACGGGAAGGAGCCTGAAAGCATC
TTTTCCAGAGAGGTGCAGGACCAC

Alignment

ORF - retro_mluc_1423 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 82.76 %
• Parental protein coverage: 77.18 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  KNRCYRLAV-RAVIRAFVKCTKARRRKRGILRTLWINRITAASQEHGLHYPAFVGNLVKCQVELNRKVLA
          KN.CYRL.....VIRAFVKCTKARRRKR.ILRTL.INRITA.SQEHGLHYPAF.GNL.KCQVELNRKVLA
Retrocopy KNCCYRLSL<LSVIRAFVKCTKARRRKRRILRTLLINRITAVSQEHGLHYPAFIGNLIKCQVELNRKVLA

Parental  DLAIYEPKTFKSLAALAKRRREEGFAAALGDGKEPEGIFSRVVQYH
          DLAI..PKTFKSLAALA.RRRE.GFAA.L.DGKEPE.IFSR.VQ.H
Retrocopy DLAIDGPKTFKSLAALARRRREGGFAAVLEDGKEPESIFSREVQDH

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1423 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 11 parental genes, and 15 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000013932	2 retrocopies	retro_amel_143, retro_amel_545,
Canis familiaris	ENSCAFG00000019259	2 retrocopies	retro_cfam_2112, retro_cfam_826,
Dasypus novemcinctus	ENSDNOG00000010105	1 retrocopy	retro_dnov_1620,
Homo sapiens	ENSG00000242485	1 retrocopy	retro_hsap_2508,
Gorilla gorilla	ENSGGOG00000027251	1 retrocopy	retro_ggor_1565,
Myotis lucifugus	ENSMLUG00000011857	1 retrocopy	retro_mluc_1423 ,
Monodelphis domestica	ENSMODG00000006562	2 retrocopies	retro_mdom_1424, retro_mdom_719,
Mus musculus	ENSMUSG00000029066	1 retrocopy	retro_mmus_1624,
Otolemur garnettii	ENSOGAG00000005968	1 retrocopy	retro_ogar_2263,
Procavia capensis	ENSPCAG00000001425	1 retrocopy	retro_pcap_238,
Tupaia belangeri	ENSTBEG00000008735	2 retrocopies	retro_tbel_2193, retro_tbel_892,