RetrogeneDB ID: | retro_bole_30 | ||
Retrocopylocation | Organism: | Brassica oleracea | |
Coordinates: | C9:47270253..47271459(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | Bo9g160030 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | Bo9g118840 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 54.69 % |
Parental protein coverage: | 78.87 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | DDDAAETKSEAAKKLKIGIYFATWWALNVVFNIYNKKVLNAYPYPWLTSTLSLAAGSLMMLISWAVGIVE |
....A..K...AK.L..GI.F..W...N.VFNI.NKK.LN..PYPWL.....L.AGS..ML..W...... | |
Retrocopy | ESEEAAKKEKKAKNLQLGIVFGLWYFQNIVFNIFNKKALNVFPYPWLLASFQLFAGSVWMLVLWSFKLYP |
Parental | TPKTDFDFWKTLFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLLGETFPTSVYLSLI |
.PK....F...L...A..HT.GH..A.VS.SKVAVSFTH.IKS.EP.FSV..S.F.LG.T.P..V.LS.. | |
Retrocopy | CPKISKPFIVALLGPALFHTVGHISACVSFSKVAVSFTHVIKSAEPVFSVIFSSF-LGDTYPLAVWLSIL |
Parental | PIIGGCALSALTELNFNMTGFMGAMISNLAFVFRNIFSKKGMKG-KSVSGMNYYACLSMLSLLILTPFAI |
PI..GC.L.A.TE..FN..G..GAMISN..FV.RNI.SK......K...G.N.Y.C.S.LSL..L.P.A. | |
Retrocopy | PIVMGCSLAAVTEVSFNLGGLSGAMISNVGFVLRNIYSKRSLQSFKEIDGLNLYGCISILSLVYLFPVAV |
Parental | AVEGPQMWIDGWQKALSDVGP--QFVGWVAAQSVFYHLYNQVSYMSLDQISPLTFSVGNTMKRISVIVSS |
.VEG.Q.W..G..KA...VG....F..WV....VFYHLYNQ.SY..LD.ISPLTFSVGNTMKR..VIVS. | |
Retrocopy | FVEGSQ-WVQGYHKAIASVGKPWTFYFWVLLSGVFYHLYNQSSYQALDEISPLTFSVGNTMKRVVVIVST |
Parental | IIIFRTPVQPVNALGAAIAILGTFLYSQA |
...FR.PV.P.NALG.AIAI.GTFLYSQA | |
Retrocopy | VLVFRNPVRPLNALGSAIAIFGTFLYSQA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Amborella trichopoda | AMTR_s00062p00036220 | 1 retrocopy | |
Brassica oleracea | Bo9g118840 | 1 retrocopy |
retro_bole_30 ,
|
Musa acuminata | GSMUA_Achr7G03380_001 | 1 retrocopy | |
Populus trichocarpa | POPTR_0001s44610 | 1 retrocopy | |
Physcomitrella patens | PP1S70_177V6 | 1 retrocopy | |
Arabidopsis lyrata | scaffold_802017.1 | 1 retrocopy | |
Theobroma cacao | TCM_030978 | 1 retrocopy |