RetrogeneDB ID: | retro_btau_604 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 15:55922348..55922854(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2G1 | ||
Ensembl ID: | ENSBTAG00000014433 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2 G1 [Source:RefSeq peptide;Acc:NP_001075927] |
Percent Identity: | 84.12 % |
Parental protein coverage: | 99.41 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MTELQSALLLRRQLAELNKNPVEGFSAGLID-DNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRP |
MTELQ..LL.RR.LAELNKNPVEGFS.GLI..DNDLY.WEVLII..PDTLYEGGVF.A.LTFPKDYPL.P | |
Retrocopy | MTELQLVLL*RRHLAELNKNPVEGFSEGLIE<DNDLYQWEVLIIALPDTLYEGGVFRARLTFPKDYPLWP |
Parental | PKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANV |
PKMKFITEI.HPNVDK.GDVC.SILH..GEDKYGYEKPEE..LPIHTVE.IMISV.SMLADPNGDSPANV | |
Retrocopy | PKMKFITEIQHPNVDKHGDVCFSILHKSGEDKYGYEKPEEC*LPIHTVEIIMISVMSMLADPNGDSPANV |
Parental | DAAKEWREDRNGEFKRKVARCVRKSQETAF |
DAAKEWREDRNGE.KR.VA.CVR.SQE.AF | |
Retrocopy | DAAKEWREDRNGEVKRTVALCVRRSQEPAF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 65 .10 RPM |
ERP005899_muscle | 0 .00 RPM | 35 .79 RPM |
SRP017611_brain | 0 .00 RPM | 46 .73 RPM |
SRP017611_kidney | 0 .00 RPM | 53 .76 RPM |
SRP017611_liver | 0 .00 RPM | 35 .79 RPM |
SRP030211_testis | 0 .05 RPM | 31 .09 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000014433 | 1 retrocopy |
retro_btau_604 ,
|
Choloepus hoffmanni | ENSCHOG00000011801 | 1 retrocopy | |
Ciona savignyi | ENSCSAVG00000009498 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000009769 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000002118 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000000248 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000008795 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000010041 | 3 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000002399 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000006117 | 1 retrocopy | |
Tetraodon nigroviridis | ENSTNIG00000008566 | 1 retrocopy | |
Takifugu rubripes | ENSTRUG00000005995 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000000595 | 1 retrocopy | |
Drosophila melanogaster | FBgn0058045 | 1 retrocopy |