RetrogeneDB ID: | retro_cfam_483 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 12:26402092..26402562(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TPT1 | ||
Ensembl ID: | ENSCAFG00000004533 | ||
Aliases: | None | ||
Description: | tumor protein, translationally-controlled 1 [Source:HGNC Symbol;Acc:12022] |
Percent Identity: | 85.44 % |
Parental protein coverage: | 90.7 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | EMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEG-PEGEGTE-STVITGVDIVMNHHLQ |
EMFSDIYKIREIAD.L.LEVE.KMVSRT.GNIDD..IGGNASAEG.P.G.....STVITGVDIV.NHHLQ | |
Retrocopy | EMFSDIYKIREIADRLSLEVEEKMVSRTGGNIDDLFIGGNASAEG<PGGRRYQKSTVITGVDIVRNHHLQ |
Parental | ETSFTKEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAAEQIKHILANFKNYQFFIGENMNPDGMVALL |
ETSFTKEAYKK.IKD.MKSIKGKLEEQRPERVKPFM.GAAEQIKHILANFKN..FF..ENMNPDGMVALL | |
Retrocopy | ETSFTKEAYKKCIKDDMKSIKGKLEEQRPERVKPFMRGAAEQIKHILANFKN*EFFSSENMNPDGMVALL |
Parental | DYREDGVTPYMIFFKDGL |
DY.EDGVTPYM.FFKDGL | |
Retrocopy | DYCEDGVTPYMVFFKDGL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .04 RPM | 463 .88 RPM |
SRP017611_brain | 0 .00 RPM | 234 .37 RPM |
SRP017611_kidney | 0 .07 RPM | 1876 .97 RPM |
SRP017611_liver | 0 .00 RPM | 989 .52 RPM |