RetrogeneDB ID: | retro_itri_325 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393284.1:24650609..24651038(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TPT1 | ||
Ensembl ID: | ENSSTOG00000006931 | ||
Aliases: | None | ||
Description: | tumor protein, translationally-controlled 1 [Source:HGNC Symbol;Acc:12022] |
Percent Identity: | 84.03 % |
Parental protein coverage: | 79.01 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | LEVEGKMVSRTEGNIDDSLIGGNASAEGPEGEGTESTVITGVDIVMNHHLQETSFTKEAYKKYIKDYMKS |
LE.EGKMVSRTEGNIDDSLIGGNASAE.P...G..STVITGVDIVMNH.LQETSFTKE.YKKYIKDYMKS | |
Retrocopy | LELEGKMVSRTEGNIDDSLIGGNASAERPKVKGMDSTVITGVDIVMNHPLQETSFTKETYKKYIKDYMKS |
Parental | IKGKLEEQR-PERVKPFMTGAAEQIKHILANFKNYQFFIGENMNPDGMVALLDYREDGVTPYMIFFKDGL |
.KGKL.EQR.PERVKPF.TGA.EQIKHILANFKNYQFFIGENMN..GMV.LLDY....V.PYMIFFKDGL | |
Retrocopy | TKGKLIEQRSPERVKPFQTGATEQIKHILANFKNYQFFIGENMNLGGMVSLLDYVR-MV*PYMIFFKDGL |
Parental | EMEK |
.MEK | |
Retrocopy | *MEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |