Parental gene:

TPT1, ENSPCAG00000016228

Aliases:None
Description:tumor protein, translationally-controlled 1 [Source:HGNC Symbol;Acc:12022]
Organism:Hyrax (Procavia capensis)
Coordinates:scaffold_57935:308..3055(+)


>ENSPCAG00000016228
ATGATTATCTACCGGGACCTCATCAGCCATGATGAGATGTTCTCCGACATTTACAAGATCCGGGAGATCGCGGACGGGCT
GTGCCTGGAGGTGGAGGGGAAGATGGTCAGTAGGACAGAGGGTAACATTGACGATTCACTGATTGGTGGAAATGCCTCAG
CTGAAGGACCCGAAGGTGAAGGAACAGAAAGCACAGTAATCACTGGTGTAGATATTGTCATCAACCATCACTTGCAGGAA
ACCAGCTTCACAAAAGAGGCCTACAAGAAGTATATCAAAGATTATATGAAATCAATCAAAGGCAAACTTGAAGAACAGAG
ACCAGAAAGAGTAAAACCTTTTATGACGGGAGCTGCAGAACAAATCAAGCACATCCTTGCTAATTTCAAAAACTACCAGT
TCTTTATTGGTGAAAACATGAATCCAGATGGTATGGTTGCTCTGCTCGACTACCGTGAGGATGGTGTGACCCCATATATG
ATTTTCTTTAAGGATGGTTTAGAAATGGAAAAATGTGTAAGTATGAGGAAACCAGTCAAAATTAGTAATATGAAAGGGAC
TTTTTAG

Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000006531 ortholog_one2one 2 retrogenes
retro_acar_156, retro_acar_58,
Ailuropoda melanoleuca ENSAMEG00000013022 possible_ortholog 8 retrogenes
retro_amel_1153, retro_amel_1521, retro_amel_1593, retro_amel_1804, retro_amel_1878, retro_amel_472, retro_amel_569, retro_amel_969,
Bos taurus ENSBTAG00000010156 possible_ortholog 2 retrogenes
retro_btau_21, retro_btau_235,
Canis familiaris ENSCAFG00000004533 possible_ortholog 10 retrogenes
retro_cfam_1110, retro_cfam_1328, retro_cfam_1476, retro_cfam_1508, retro_cfam_1846, retro_cfam_254, retro_cfam_341, retro_cfam_483, retro_cfam_661, retro_cfam_777,
Callithrix jacchus ENSCJAG00000019229 possible_ortholog 2 retrogenes
retro_cjac_1786, retro_cjac_314,
Cavia porcellus ENSCPOG00000009278 possible_ortholog 12 retrogenes
retro_cpor_1053, retro_cpor_1215, retro_cpor_1273, retro_cpor_206, retro_cpor_248, retro_cpor_340, retro_cpor_536, retro_cpor_583, retro_cpor_602, retro_cpor_697, retro_cpor_917, retro_cpor_968,
Dasypus novemcinctus ENSDNOG00000000653 ortholog_one2one 22 retrogenes
retro_dnov_1071, retro_dnov_1202, retro_dnov_1349, retro_dnov_1705, retro_dnov_2082, retro_dnov_2283, retro_dnov_2305, retro_dnov_237, retro_dnov_2412, retro_dnov_2531, retro_dnov_2687, retro_dnov_276, retro_dnov_342, retro_dnov_397, retro_dnov_417, retro_dnov_453, retro_dnov_71, retro_dnov_847, retro_dnov_870, retro_dnov_909, retro_dnov_934, retro_dnov_981,
Equus caballus ENSECAG00000018348 possible_ortholog 3 retrogenes
retro_ecab_337, retro_ecab_686, retro_ecab_727,
Echinops telfairi ENSETEG00000003091 possible_ortholog 3 retrogenes
retro_etel_1337, retro_etel_1546, retro_etel_248,
Gorilla gorilla ENSGGOG00000001684 possible_ortholog 12 retrogenes
retro_ggor_1561, retro_ggor_1681, retro_ggor_1807, retro_ggor_2045, retro_ggor_2484, retro_ggor_2628, retro_ggor_2652, retro_ggor_2877, retro_ggor_2878, retro_ggor_2980, retro_ggor_584, retro_ggor_855,
Latimeria chalumnae ENSLACG00000004306 ortholog_one2one 2 retrogenes
retro_lcha_24, retro_lcha_34,
Loxodonta africana ENSLAFG00000021740 possible_ortholog 7 retrogenes
retro_lafr_1008, retro_lafr_1195, retro_lafr_1211, retro_lafr_1247, retro_lafr_347, retro_lafr_484, retro_lafr_883,
Myotis lucifugus ENSMLUG00000017709 possible_ortholog 1 retrogene
retro_mluc_1332,
Macaca mulatta ENSMMUG00000022979 possible_ortholog 2 retrogenes
retro_mmul_158, retro_mmul_85,
Monodelphis domestica ENSMODG00000014940 possible_ortholog 2 retrogenes
retro_mdom_128, retro_mdom_9,
Mustela putorius furo ENSMPUG00000001640 possible_ortholog 10 retrogenes
retro_mputfur_1043, retro_mputfur_30, retro_mputfur_364, retro_mputfur_565, retro_mputfur_574, retro_mputfur_582, retro_mputfur_677, retro_mputfur_870, retro_mputfur_960, retro_mputfur_967,
Nomascus leucogenys ENSNLEG00000002108 possible_ortholog 8 retrogenes
retro_nleu_1262, retro_nleu_1281, retro_nleu_1637, retro_nleu_2127, retro_nleu_2539, retro_nleu_2540, retro_nleu_368, retro_nleu_9,
Oryctolagus cuniculus ENSOCUG00000023692 possible_ortholog 2 retrogenes
retro_ocun_40, retro_ocun_75,
Pongo abelii ENSPPYG00000005335 possible_ortholog 5 retrogenes
retro_pabe_1958, retro_pabe_2626, retro_pabe_2809, retro_pabe_83, retro_pabe_900,
Rattus norvegicus ENSRNOG00000001049 possible_ortholog 7 retrogenes
retro_rnor_115, retro_rnor_2464, retro_rnor_2706, retro_rnor_411, retro_rnor_886, retro_rnor_908, retro_rnor_958,
Sarcophilus harrisii ENSSHAG00000001545 possible_ortholog 1 retrogene
retro_shar_227,
Ictidomys tridecemlineatus ENSSTOG00000006931 possible_ortholog 7 retrogenes
retro_itri_1192, retro_itri_146, retro_itri_266, retro_itri_325, retro_itri_612, retro_itri_700, retro_itri_999,
Tupaia belangeri ENSTBEG00000013539 possible_ortholog 25 retrogenes
retro_tbel_1009, retro_tbel_1556, retro_tbel_1634, retro_tbel_1724, retro_tbel_1725, retro_tbel_2086, retro_tbel_2100, retro_tbel_2265, retro_tbel_2278, retro_tbel_2464, retro_tbel_2550, retro_tbel_2767, retro_tbel_3238, retro_tbel_3354, retro_tbel_3403, retro_tbel_3410, retro_tbel_3592, retro_tbel_3888, retro_tbel_4226, retro_tbel_4400, retro_tbel_4526, retro_tbel_459, retro_tbel_4641, retro_tbel_4733, retro_tbel_830,
Vicugna pacos ENSVPAG00000008472 possible_ortholog 5 retrogenes
retro_vpac_1, retro_vpac_101, retro_vpac_159, retro_vpac_539, retro_vpac_552,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pcap_245 51.92 54.79
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2. retro_pcap_351 72.57 59.04
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3. retro_pcap_357 61.84 79.79
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Download FASTA sequences of all ENSPCAG00000016228 retrocopies