RetrogeneDB ID: | retro_dnov_2305 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_62535:1..433(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TPT1 | ||
Ensembl ID: | ENSDNOG00000000653 | ||
Aliases: | None | ||
Description: | tumor protein, translationally-controlled 1 [Source:HGNC Symbol;Acc:12022] |
Percent Identity: | 72.3 % |
Parental protein coverage: | 82.66 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | LCLEVE-GKMVSRTEGSIDDSLIGGNASAEGPEGEGTE-STVITGVDIVMNHH--QEPFTKEAYKKYIKD |
LCLEVE.GKMVSRT.GSIDD.LIGG.ASA.GP.GEGT..S.VITGVDI.M.HH.....FTK.AYKKYIKD | |
Retrocopy | LCLEVE<GKMVSRTKGSIDDVLIGGHASAKGPVGEGTK<SKVITGVDIFMKHHFQETSFTKVAYKKYIKD |
Parental | YMKSIKGKLEEQRPERVKSF-MTGAAEQIKHILANFNNYQFFIGENMNPDGMVALLDYREDGVTPYMIFF |
.MK.IK.KLEEQRPERVKSF..T.AA.Q.KHIL.NFNN...FIGE.MNP..MVA.LDY.ED....YMI.F | |
Retrocopy | NMKLIKDKLEEQRPERVKSF<LTEAAKQVKHILVNFNNH*YFIGEHMNPNDMVAFLDYHEDDIALYMIYF |
Parental | KDGLEMEK |
KDGLEM.. | |
Retrocopy | KDGLEMKQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 181 .44 RPM |
SRP012922_cerebellum | 0 .00 RPM | 63 .51 RPM |
SRP012922_heart | 0 .00 RPM | 91 .19 RPM |
SRP012922_kidney | 0 .00 RPM | 265 .86 RPM |
SRP012922_liver | 0 .00 RPM | 112 .23 RPM |
SRP012922_lung | 0 .00 RPM | 210 .30 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 308 .78 RPM |
SRP012922_spleen | 0 .00 RPM | 310 .30 RPM |