Parental gene:

TPT1, ENSLACG00000004306

Aliases:None
Description:None
Organism:Coelacanth (Latimeria chalumnae)
Coordinates:JH128538.1:117417..136593(-)


>ENSLACG00000004306
ATGCTCATCTATAAGGACATCATCACTGGAGATGAGATGTTCTCCGATATCTACAAAATCAAAGAAACCGAGAGTGGCTG
CTGCTTTGAAGTGGAGGGAAAGGTGGTTAAAAGAACAGAGGGCGACATTCCTGACTCTCTGATTGGTGGGAATGCATCTT
CTGAAGTTGGAGAAGATGGTGACCTGCAATCTACCACAATCAGTGGTGTAGATATTGTATTGAACCACAAGCTGCAAGAG
ACTGGCTTCCAGAAGGAAACCTACACACTTTACCTCAAAAAGTATATGAAAACCATTAAAGAGAAACTTGGTGAAGAGAA
GCCTGAGCGAGTCAATGACTTTGTTAAGAATGCACCACAGGCGTGCAAAGCCATCATGGCCAACTTCAAAAACTATCAGT
TTTTCACAGGTGAGTCCATGAATCCAGATGGCATGGTGGCTTTGCTAGATTACCGTGAAGATGGCATCACCCCATACATG
ATCTTCTTTAAGGATGGGCTGGAAATTGAGAAATGTTGTTGTGTGTGTGCTGTGAAAAGTGGTAAAATTCCCAATCCAAA
GAACAAATTT

Library Parental gene expression (RPM)
DRP000627_pectoral_fin 1297 .55 RPM
DRP000627_kidney 712 .60 RPM
DRP000627_pelvic_fin 1558 .08 RPM
DRP000627_pharynx 504 .18 RPM
DRP000627_gill 780 .23 RPM
DRP000627_tail_muscle 381 .97 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000006531 ortholog_one2one 2 retrogenes
retro_acar_156, retro_acar_58,
Ailuropoda melanoleuca ENSAMEG00000013022 ortholog_one2many 8 retrogenes
retro_amel_1153, retro_amel_1521, retro_amel_1593, retro_amel_1804, retro_amel_1878, retro_amel_472, retro_amel_569, retro_amel_969,
Bos taurus ENSBTAG00000010156 ortholog_one2many 2 retrogenes
retro_btau_21, retro_btau_235,
Canis familiaris ENSCAFG00000004533 ortholog_one2many 10 retrogenes
retro_cfam_1110, retro_cfam_1328, retro_cfam_1476, retro_cfam_1508, retro_cfam_1846, retro_cfam_254, retro_cfam_341, retro_cfam_483, retro_cfam_661, retro_cfam_777,
Callithrix jacchus ENSCJAG00000019229 ortholog_one2many 2 retrogenes
retro_cjac_1786, retro_cjac_314,
Cavia porcellus ENSCPOG00000009278 ortholog_one2many 12 retrogenes
retro_cpor_1053, retro_cpor_1215, retro_cpor_1273, retro_cpor_206, retro_cpor_248, retro_cpor_340, retro_cpor_536, retro_cpor_583, retro_cpor_602, retro_cpor_697, retro_cpor_917, retro_cpor_968,
Dasypus novemcinctus ENSDNOG00000000653 ortholog_one2one 22 retrogenes
retro_dnov_1071, retro_dnov_1202, retro_dnov_1349, retro_dnov_1705, retro_dnov_2082, retro_dnov_2283, retro_dnov_2305, retro_dnov_237, retro_dnov_2412, retro_dnov_2531, retro_dnov_2687, retro_dnov_276, retro_dnov_342, retro_dnov_397, retro_dnov_417, retro_dnov_453, retro_dnov_71, retro_dnov_847, retro_dnov_870, retro_dnov_909, retro_dnov_934, retro_dnov_981,
Dipodomys ordii ENSDORG00000008518 ortholog_one2one 2 retrogenes
retro_dord_370, retro_dord_471,
Equus caballus ENSECAG00000018348 ortholog_one2many 3 retrogenes
retro_ecab_337, retro_ecab_686, retro_ecab_727,
Echinops telfairi ENSETEG00000003091 ortholog_one2many 3 retrogenes
retro_etel_1337, retro_etel_1546, retro_etel_248,
Felis catus ENSFCAG00000002107 ortholog_one2one 8 retrogenes
retro_fcat_1366, retro_fcat_1544, retro_fcat_1996, retro_fcat_443, retro_fcat_553, retro_fcat_645, retro_fcat_735, retro_fcat_992,
Homo sapiens ENSG00000133112 ortholog_one2one 13 retrogenes
retro_hsap_1083, retro_hsap_2234, retro_hsap_2256, retro_hsap_2382, retro_hsap_2503, retro_hsap_3156, retro_hsap_3676, retro_hsap_3828, retro_hsap_3946, retro_hsap_4307, retro_hsap_4701, retro_hsap_4786, retro_hsap_678,
Gorilla gorilla ENSGGOG00000001684 ortholog_one2many 12 retrogenes
retro_ggor_1561, retro_ggor_1681, retro_ggor_1807, retro_ggor_2045, retro_ggor_2484, retro_ggor_2628, retro_ggor_2652, retro_ggor_2877, retro_ggor_2878, retro_ggor_2980, retro_ggor_584, retro_ggor_855,
Loxodonta africana ENSLAFG00000021740 ortholog_one2many 7 retrogenes
retro_lafr_1008, retro_lafr_1195, retro_lafr_1211, retro_lafr_1247, retro_lafr_347, retro_lafr_484, retro_lafr_883,
Microcebus murinus ENSMICG00000002027 ortholog_one2one 9 retrogenes
retro_mmur_102, retro_mmur_1060, retro_mmur_1163, retro_mmur_1627, retro_mmur_248, retro_mmur_318, retro_mmur_490, retro_mmur_641, retro_mmur_967,
Myotis lucifugus ENSMLUG00000017709 ortholog_one2many 1 retrogene
retro_mluc_1332,
Macaca mulatta ENSMMUG00000022979 ortholog_one2many 2 retrogenes
retro_mmul_158, retro_mmul_85,
Monodelphis domestica ENSMODG00000014940 ortholog_one2many 2 retrogenes
retro_mdom_128, retro_mdom_9,
Mustela putorius furo ENSMPUG00000001640 ortholog_one2many 10 retrogenes
retro_mputfur_1043, retro_mputfur_30, retro_mputfur_364, retro_mputfur_565, retro_mputfur_574, retro_mputfur_582, retro_mputfur_677, retro_mputfur_870, retro_mputfur_960, retro_mputfur_967,
Mus musculus ENSMUSG00000060126 ortholog_one2one 8 retrogenes
retro_mmus_1643, retro_mmus_2193, retro_mmus_2354, retro_mmus_2862, retro_mmus_3264, retro_mmus_3371, retro_mmus_3483, retro_mmus_3496,
Nomascus leucogenys ENSNLEG00000002108 ortholog_one2many 8 retrogenes
retro_nleu_1262, retro_nleu_1281, retro_nleu_1637, retro_nleu_2127, retro_nleu_2539, retro_nleu_2540, retro_nleu_368, retro_nleu_9,
Oryctolagus cuniculus ENSOCUG00000023692 ortholog_one2many 2 retrogenes
retro_ocun_40, retro_ocun_75,
Otolemur garnettii ENSOGAG00000012523 ortholog_one2one 20 retrogenes
retro_ogar_1141, retro_ogar_1249, retro_ogar_1538, retro_ogar_1682, retro_ogar_1754, retro_ogar_2193, retro_ogar_2225, retro_ogar_2298, retro_ogar_2331, retro_ogar_2594, retro_ogar_2668, retro_ogar_2819, retro_ogar_2893, retro_ogar_2944, retro_ogar_344, retro_ogar_350, retro_ogar_3503, retro_ogar_622, retro_ogar_746, retro_ogar_906,
Procavia capensis ENSPCAG00000016228 ortholog_one2one 3 retrogenes
retro_pcap_245, retro_pcap_351, retro_pcap_357,
Pongo abelii ENSPPYG00000005335 ortholog_one2many 5 retrogenes
retro_pabe_1958, retro_pabe_2626, retro_pabe_2809, retro_pabe_83, retro_pabe_900,
Pteropus vampyrus ENSPVAG00000003191 ortholog_one2one 15 retrogenes
retro_pvam_1069, retro_pvam_1116, retro_pvam_1142, retro_pvam_1145, retro_pvam_1252, retro_pvam_1266, retro_pvam_1290, retro_pvam_1322, retro_pvam_1387, retro_pvam_242, retro_pvam_369, retro_pvam_547, retro_pvam_585, retro_pvam_721, retro_pvam_801,
Rattus norvegicus ENSRNOG00000001049 ortholog_one2many 7 retrogenes
retro_rnor_115, retro_rnor_2464, retro_rnor_2706, retro_rnor_411, retro_rnor_886, retro_rnor_908, retro_rnor_958,
Sorex araneus ENSSARG00000009319 ortholog_one2one 1 retrogene
retro_sara_113,
Sarcophilus harrisii ENSSHAG00000001545 ortholog_one2many 1 retrogene
retro_shar_227,
Ictidomys tridecemlineatus ENSSTOG00000006931 ortholog_one2many 7 retrogenes
retro_itri_1192, retro_itri_146, retro_itri_266, retro_itri_325, retro_itri_612, retro_itri_700, retro_itri_999,
Tupaia belangeri ENSTBEG00000013539 ortholog_one2many 25 retrogenes
retro_tbel_1009, retro_tbel_1556, retro_tbel_1634, retro_tbel_1724, retro_tbel_1725, retro_tbel_2086, retro_tbel_2100, retro_tbel_2265, retro_tbel_2278, retro_tbel_2464, retro_tbel_2550, retro_tbel_2767, retro_tbel_3238, retro_tbel_3354, retro_tbel_3403, retro_tbel_3410, retro_tbel_3592, retro_tbel_3888, retro_tbel_4226, retro_tbel_4400, retro_tbel_4526, retro_tbel_459, retro_tbel_4641, retro_tbel_4733, retro_tbel_830,
Tarsius syrichta ENSTSYG00000003160 ortholog_one2one 13 retrogenes
retro_tsyr_1054, retro_tsyr_1291, retro_tsyr_1549, retro_tsyr_1601, retro_tsyr_2120, retro_tsyr_314, retro_tsyr_655, retro_tsyr_763, retro_tsyr_781, retro_tsyr_784, retro_tsyr_890, retro_tsyr_958, retro_tsyr_990,
Vicugna pacos ENSVPAG00000008472 ortholog_one2many 5 retrogenes
retro_vpac_1, retro_vpac_101, retro_vpac_159, retro_vpac_539, retro_vpac_552,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_lcha_24 71.64 70.53
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2. retro_lcha_34 61.26 64.53
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Download FASTA sequences of all ENSLACG00000004306 retrocopies